myRT

myRT report for GCA_011039955.1_ASM1103995v1

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Seq: CP049318.1 Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence (1831039 bp)
Overview 1 RT 1: 1774172-1778014 bp Neighborhood of RT #1 [1774172, 1778094] RVT-Retrons DUF2326 Feature: gene Location: 1774172-1774525 bp Feature: gene Location: 1775718-1776212 bp Feature: gene Location: 1776260-1776952 bp Ori: QIE28981.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1776395-1776884 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 776395-1 776884 bp Feature: gene Location: 1777135-1777356 bp Feature: gene Location: 1777564-1778094 bp Ori: QIE28983.1 Feature: domain Description: DUF2326 Location: 1777642-1778014 bp Feature: domain Description: DUF2326 Location: 1 777642-1 77801 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF2326 (pfam10088)

Seq: CP049316.1 Caballeronia sp. SBC2 chromosome, complete genome (3989243 bp)
Overview 1 RT 1: 450574-454362 bp 2 RT 2: 2893114-2899611 bp Neighborhood of RT #1 [450574, 454364] PRK10738 RVT-GII GIIM rplM rpsI Neighborhood of RT #2 [2893114, 2899625] LutB GlpC RVT_N RVT-GII GIIM FadR galactose_mutarotase_like Feature: gene Location: 450574-450996 bp Ori: QIE22401.1 Gene: yhfA Feature: domain Description: PRK10738 Location: 450577-450991 bp Feature: domain Description: PRK10738 Location: 450577-450991 bp Feature: gene Location: 451570-451782 bp Feature: gene Location: 451798-453165 bp Ori: QIE22403.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 452125-452746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 452 12 5-452 746 bp Feature: domain Description: GIIM Note: maturase Location: 452800-453007 bp Feature: domain Description: GIIM Note: maturase Location: 452 800-453007 bp Feature: gene Location: 453433-453960 bp Ori: QIE22404.1 Gene: rplM Feature: domain Description: rplM Location: 453535-453958 bp Feature: domain Description: rplM Location: 453535-453958 bp Feature: gene Location: 453972-454364 bp Ori: QIE22405.1 Gene: rpsI Feature: domain Description: rpsI Location: 453984-454362 bp Feature: domain Description: rpsI Location: 453984-454362 bp Feature: gene Location: 2893114-2894523 bp Ori: QIE24577.1 Gene: lutB Feature: domain Description: LutB Location: 2893225-2894494 bp Feature: domain Description: LutB Location: 2 8932 2 5-2 894494 bp Feature: gene Location: 2894520-2895263 bp Ori: QIE24578.1 Gene: lutA_2 Feature: domain Description: GlpC Location: 2894523-2895255 bp Feature: domain Description: GlpC Location: 2 89452 3-2 8952 55 bp Feature: gene Location: 2895866-2897524 bp Ori: QIE24579.1 Feature: domain Description: RVT_N Location: 2895911-2896154 bp Feature: domain Description: RVT_N Location: 2 895911-2 896154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2896199-2896835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 896199-2 896835 bp Feature: domain Description: GIIM Note: maturase Location: 2896886-2897120 bp Feature: domain Description: GIIM Note: maturase Location: 2 896886-2 89712 0 bp Feature: gene Location: 2897764-2898567 bp Ori: QIE24580.1 Gene: pdhR_1 Feature: domain Description: FadR Location: 2897797-2898478 bp Feature: domain Description: FadR Location: 2 897797-2 898478 bp Feature: gene Location: 2898564-2899625 bp Ori: QIE24581.1 Gene: mro Feature: domain Description: galactose_mutarotase_like Location: 2898624-2899611 bp Feature: domain Description: galactose_mutarotase_like Location: 2 89862 4-2 899611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10738 (OsmC family protein), RVT-GII, GIIM (pfam08388), rplM (PRK09216), rpsI (PRK00132), LutB (COG1139), GlpC (COG0247), RVT_N (pfam13655), FadR (COG2186), galactose_mutarotase_like (cd09019)

Seq: CP049319.1 Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence (794780 bp)
Overview 1 RT 1: 319378-325434 bp 2 RT 2: 468686-476077 bp 3 RT 3: 508819-513186 bp 4 RT 4: 559145-563271 bp 5 RT 5: 604268-614850 bp 6 RT 6: 771773-776483 bp Neighborhood of RT #1 [319378, 325434] zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 RVT-GII GIIM Neighborhood of RT #2 [468686, 476673] xerC Tra8 RVT-GII GIIM RVT-GII GIIM Tra8 KfrA_N Neighborhood of RT #3 [508819, 513186] Aes RVT-GII GIIM DUF5372 Neighborhood of RT #4 [559145, 563306] ClC_sycA_like DDE_Tnp_1 RVT-GII AmiR Neighborhood of RT #5 [604268, 615395] COG3547 COG3547 RVT_N RVT-GII GIIM DDE_Tnp_1_2 RVT_N RVT-GII GIIM COG3547 DDE_Tnp_1_5 Neighborhood of RT #6 [771773, 776527] RVT-GII Histone_HNS TPR_17 TPR_17 TPR_17 Feature: gene Location: 319378-320604 bp Ori: QIE29354.1 Feature: domain Description: zf-ISL3 Location: 319537-319621 bp Feature: domain Description: zf-ISL3 Location: 3 1953 7-3 19621 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 319660-319798 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 3 19660-3 19798 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 319843-320545 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3 19843 -3 20545 bp Feature: gene Location: 321767-322993 bp Ori: QIE29355.1 Feature: domain Description: HTH_Tnp_ISL3 Location: 322049-322187 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 3 22049-3 22187 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 322232-322934 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3 2223 2-3 2293 4 bp Feature: gene Location: 323077-324324 bp Ori: QIE29356.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323281-323941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 23 281-3 23 941 bp Feature: domain Description: GIIM Note: maturase Location: 324022-324244 bp Feature: domain Description: GIIM Note: maturase Location: 3 24022-3 24244 bp Feature: gene Location: 324317-324586 bp Feature: gene Location: 325024-325434 bp Feature: gene Location: 468686-469885 bp Ori: QIE29501.1 Gene: xerC_22 Feature: domain Description: xerC Location: 468872-469814 bp Feature: domain Description: xerC Location: 468872-469814 bp Feature: gene Location: 469969-470220 bp Ori: QIE29502.1 Feature: domain Description: Tra8 Location: 469996-470191 bp Feature: domain Description: Tra8 Location: 469996-470191 bp Feature: gene Location: 470415-471719 bp Ori: QIE29503.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 470700-471339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 470700-4713 3 9 bp Feature: domain Description: GIIM Note: maturase Location: 471414-471633 bp Feature: domain Description: GIIM Note: maturase Location: 471414-47163 3 bp Feature: gene Location: 472271-473515 bp Ori: QIE29504.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472475-473132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472475-473 13 2 bp Feature: domain Description: GIIM Note: maturase Location: 473210-473444 bp Feature: domain Description: GIIM Note: maturase Location: 473 210-473 444 bp Feature: gene Location: 474697-475509 bp Ori: QIE29505.1 Feature: domain Description: Tra8 Location: 474709-475495 bp Feature: domain Description: Tra8 Location: 474709-475495 bp Feature: gene Location: 475648-476673 bp Ori: QIE29506.1 Feature: domain Description: KfrA_N Location: 475744-476077 bp Feature: domain Description: KfrA_N Location: 475744-476077 bp Feature: gene Location: 508819-509868 bp Ori: QIE29535.1 Gene: aes_6 Feature: domain Description: Aes Location: 509023-509854 bp Feature: domain Description: Aes Location: 509023 -509854 bp Feature: gene Location: 510009-510371 bp Feature: gene Location: 511352-512356 bp Ori: QIE29537.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 511367-511976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5113 67-511976 bp Feature: domain Description: GIIM Note: maturase Location: 512051-512270 bp Feature: domain Description: GIIM Note: maturase Location: 512051-512270 bp Feature: gene Location: 512374-512661 bp Ori: QIE29538.1 Feature: domain Description: DUF5372 Location: 512392-512623 bp Feature: domain Description: DUF53 72 Location: 5123 92-512623 bp Feature: gene Location: 512665-513186 bp Feature: gene Location: 559145-559840 bp Ori: QIE29586.1 Gene: eriC_4 Feature: domain Description: ClC_sycA_like Location: 559343-559832 bp Feature: domain Description: ClC_sycA_like Location: 5593 43 -55983 2 bp Feature: gene Location: 559833-560831 bp Ori: QIE29587.1 Feature: domain Description: DDE_Tnp_1 Location: 560253-560625 bp Feature: domain Description: DDE_Tnp_1 Location: 560253 -560625 bp Feature: gene Location: 561019-561267 bp Ori: QIE29588.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 561145-561205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 561145-561205 bp Feature: gene Location: 562160-562591 bp Feature: gene Location: 562743-563306 bp Ori: QIE29590.1 Gene: amiR Feature: domain Description: AmiR Location: 562749-563271 bp Feature: domain Description: AmiR Location: 562749-563 271 bp Feature: gene Location: 604268-605233 bp Ori: QIE29638.1 Feature: domain Description: COG3547 Location: 604493-605210 bp Feature: domain Description: COG3 547 Location: 604493 -605210 bp Feature: gene Location: 605285-606394 bp Ori: QIE29639.1 Feature: domain Description: COG3547 Location: 605300-606275 bp Feature: domain Description: COG3 547 Location: 6053 00-606275 bp Feature: gene Location: 607696-609354 bp Ori: QIE29640.1 Feature: domain Description: RVT_N Location: 607741-607984 bp Feature: domain Description: RVT_N Location: 607741-607984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 608029-608665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 608029-608665 bp Feature: domain Description: GIIM Note: maturase Location: 608716-608950 bp Feature: domain Description: GIIM Note: maturase Location: 608716-608950 bp Feature: gene Location: 609626-609973 bp Ori: QIE29641.1 Feature: domain Description: DDE_Tnp_1_2 Location: 609716-609968 bp Feature: domain Description: DDE_Tnp_1_2 Location: 609716-609968 bp Feature: gene Location: 610086-610604 bp Feature: gene Location: 610725-612383 bp Ori: QIE29643.1 Feature: domain Description: RVT_N Location: 610770-611013 bp Feature: domain Description: RVT_N Location: 610770-611013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 611058-611694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 611058-611694 bp Feature: domain Description: GIIM Note: maturase Location: 611745-611979 bp Feature: domain Description: GIIM Note: maturase Location: 611745-611979 bp Feature: gene Location: 613164-614318 bp Ori: QIE29644.1 Feature: domain Description: COG3547 Location: 613389-614271 bp Feature: domain Description: COG3 547 Location: 613 3 89-614271 bp Feature: gene Location: 614436-615395 bp Ori: QIE29645.1 Feature: domain Description: DDE_Tnp_1_5 Location: 614523-614850 bp Feature: domain Description: DDE_Tnp_1_5 Location: 614523 -614850 bp Feature: gene Location: 771773-771988 bp Feature: gene Location: 772266-772811 bp Feature: gene Location: 772808-774340 bp Ori: QIE29799.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773219-773909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773 219-773 909 bp Feature: gene Location: 774881-775177 bp Ori: QIE29800.1 Feature: domain Description: Histone_HNS Location: 774902-775148 bp Feature: domain Description: Histone_HNS Location: 774902-775148 bp Feature: gene Location: 775685-776527 bp Ori: QIE29801.1 Feature: domain Description: TPR_17 Location: 776186-776264 bp Feature: domain Description: TPR_17 Location: 776186-776264 bp Feature: domain Description: TPR_17 Location: 776297-776387 bp Feature: domain Description: TPR_17 Location: 776297-7763 87 bp Feature: domain Description: TPR_17 Location: 776396-776483 bp Feature: domain Description: TPR_17 Location: 7763 96-776483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), RVT-GII, GIIM (pfam08388), xerC (PRK01287), Tra8 (COG2826), KfrA_N (pfam11740), Aes (COG0657), DUF5372 (pfam17342)
ClC_sycA_like (cd03682), DDE_Tnp_1 (pfam01609), AmiR (COG3707), COG3547 (Transposase ), RVT_N (pfam13655), DDE_Tnp_1_2 (pfam13586), DDE_Tnp_1_5 (pfam13737), Histone_HNS (pfam00816), TPR_17 (pfam13431)

Seq: CP049317.1 Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence (1990521 bp)
Overview 1 RT 1: 361791-367612 bp Neighborhood of RT #1 [361791, 367803] PRK11667 DUF1090 RVT-UG7 Zn_Tnp_IS91 Y2_Tnp Feature: gene Location: 361791-362267 bp Ori: QIE25882.1 Feature: domain Description: PRK11667 Location: 361797-362259 bp Feature: domain Description: PRK11667 Location: 361797-362259 bp Feature: gene Location: 362439-362819 bp Ori: QIE25883.1 Feature: domain Description: DUF1090 Location: 362484-362793 bp Feature: domain Description: DUF1090 Location: 3624 84 -362793 bp Feature: gene Location: 363544-365115 bp Ori: QIE25884.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 363958-364357 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 363958-364 357 bp Feature: gene Location: 365264-366256 bp Feature: gene Location: 366802-367803 bp Ori: QIE25886.1 Feature: domain Description: Zn_Tnp_IS91 Location: 366811-366928 bp Feature: domain Description: Zn_Tnp_IS91 Location: 366811-366928 bp Feature: domain Description: Y2_Tnp Location: 367054-367612 bp Feature: domain Description: Y2_Tnp Location: 367054 -367612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11667 (hypothetical protein; Provisional), DUF1090 (pfam06476), RVT-UG7, Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986)

Seq: CP049322.1 Caballeronia sp. SBC2 plasmid pSBC2-6, complete sequence (120676 bp)
Overview 1 RT 1: 2097-7093 bp Neighborhood of RT #1 [2097, 7467] VirB5_like zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 RVT-GII GIIM TrbL Feature: gene Location: 2097-2780 bp Ori: QIE30371.1 Gene: virB5_3 Feature: domain Description: VirB5_like Location: 2184-2703 bp Feature: domain Description: VirB5 _like Location: 2184-2703 bp Feature: gene Location: 2946-4172 bp Ori: QIE30372.1 Feature: domain Description: zf-ISL3 Location: 3105-3189 bp Feature: domain Description: zf-ISL3 Location: 3105 -3189 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 3228-3366 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 3228-3366 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3411-4113 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3411-4113 bp Feature: gene Location: 4256-5503 bp Ori: QIE30373.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4460-5120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4460-5 120 bp Feature: domain Description: GIIM Note: maturase Location: 5201-5423 bp Feature: domain Description: GIIM Note: maturase Location: 5 201-5 423 bp Feature: gene Location: 5496-5765 bp Feature: gene Location: 6295-7467 bp Ori: QIE30375.1 Feature: domain Description: TrbL Location: 6421-7093 bp Feature: domain Description: TrbL Location: 6421-7093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB5_like (cl02193), zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), RVT-GII, GIIM (pfam08388), TrbL (pfam04610)