myRT

myRT report for GCA_011045215.1_ASM1104521v1

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Seq: CP049201.1 Escherichia coli strain PapRG-04-4 chromosome, complete genome (5409430 bp)
Overview 1 RT 1: 57195-61077 bp 2 RT 2: 4217260-4222099 bp Neighborhood of RT #1 [57195, 61082] rph pyrE RVT-Retrons slmA dut Neighborhood of RT #2 [4217260, 4222278] Relaxase RVT-Retrons PHA03100 Feature: gene Location: 57195-57911 bp Ori: QIF11475.1 Gene: rph Feature: domain Description: rph Location: 57198-57906 bp Feature: domain Description: rph Location: 571 98-57906 bp Feature: gene Location: 57977-58618 bp Ori: QIF11476.1 Gene: pyrE Feature: domain Description: pyrE Location: 57980-58613 bp Feature: domain Description: pyrE Location: 57980-5861 3 bp Feature: gene Location: 58916-59875 bp Ori: QIF11477.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59051-59600 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59051 -59600 bp Feature: gene Location: 59921-60517 bp Ori: QIF11478.1 Gene: slmA Feature: domain Description: slmA Location: 59927-60503 bp Feature: domain Description: slmA Location: 59927-60503 bp Feature: gene Location: 60624-61082 bp Ori: QIF11479.1 Gene: dut Feature: domain Description: dut Location: 60630-61077 bp Feature: domain Description: dut Location: 60630-61 077 bp Feature: gene Location: 4217260-4218396 bp Ori: QIF15118.1 Feature: domain Description: Relaxase Location: 4217290-4218031 bp Feature: domain Description: Relaxase Location: 421 7290-421 8031 bp Feature: gene Location: 4218365-4218739 bp Feature: gene Location: 4218886-4220049 bp Ori: QIF15120.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4219111-4219786 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 421 91 1 1 -421 9786 bp Feature: gene Location: 4220238-4221458 bp Feature: gene Location: 4221694-4222278 bp Ori: QIF15122.1 Feature: domain Description: PHA03100 Location: 4221715-4222099 bp Feature: domain Description: PHA031 00 Location: 4221 71 5-4222099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576), Relaxase (pfam03432), PHA03100 (ankyrin repeat protein; Provisional)

Seq: CP049202.1 Escherichia coli strain PapRG-04-4 plasmid pIncFIB, complete sequence (167766 bp)
Overview 1 RT 1: 49368-53648 bp Neighborhood of RT #1 [49368, 53665] PinE RVT-GII PHA02517 PRK09940 Feature: gene Location: 49368-49949 bp Ori: QIF16408.1 Feature: domain Description: PinE Location: 49371-49926 bp Feature: domain Description: PinE Location: 49371-4992 6 bp Feature: gene Location: 49994-50587 bp Feature: gene Location: 50665-52174 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50923-51142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5092 3-51142 bp Feature: gene Location: 52258-52722 bp Feature: domain Description: PHA02517 Location: 52261-52720 bp Feature: domain Description: PHA02 517 Location: 52 2 61-52 72 0 bp Feature: gene Location: 52949-53665 bp Ori: QIF16522.1 Feature: domain Description: PRK09940 Location: 52961-53648 bp Feature: domain Description: PRK09940 Location: 52 961-53648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), PRK09940 (transcriptional regulator YdeO; Provisional)