myRT

myRT report for GCA_011045455.1_ASM1104545v1

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Seq: CP034254.1 Escherichia coli strain IVRI Kol CP4 plasmid p1ESCUMpO83_CORR (92840 bp)
Overview 1 RT 1: 14353-18083 bp Neighborhood of RT #1 [14353, 18083] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 14353-14775 bp Ori: QIF72200.1 Feature: domain Description: DUF1380 Location: 14356-14653 bp Feature: domain Description: DUF1 380 Location: 1 4356-1 4653 bp Feature: gene Location: 14772-14963 bp Feature: gene Location: 15277-16944 bp Ori: QIF72202.1 Gene: ltrA Feature: domain Description: RVT_N Location: 15325-15562 bp Feature: domain Description: RVT_N Location: 1 5325-1 5562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15613-16255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 561 3-1 6255 bp Feature: domain Description: GIIM Note: maturase Location: 16306-16540 bp Feature: domain Description: GIIM Note: maturase Location: 1 6306-1 6540 bp Feature: domain Description: HNHc Note: nucleases Location: 16750-16909 bp Feature: domain Description: HNHc Note: nucleases Location: 1 6750-1 6909 bp Feature: gene Location: 17658-17846 bp Feature: gene Location: 17847-18083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CP034253.1 Escherichia coli strain IVRI Kol CP4 chromosome, complete genome (4690918 bp)
Overview 1 RT 1: 1584011-1587891 bp Neighborhood of RT #1 [1584011, 1587896] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 1584011-1584727 bp Ori: QIF69440.1 Feature: domain Description: rph Location: 1584014-1584722 bp Feature: domain Description: rph Location: 1584014-158472 2 bp Feature: gene Location: 1584794-1585435 bp Ori: QIF69441.1 Feature: domain Description: pyrE Location: 1584797-1585430 bp Feature: domain Description: pyrE Location: 1584797-1585430 bp Feature: gene Location: 1585733-1586692 bp Ori: QIF69442.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1585868-1586417 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1585868-1586417 bp Feature: gene Location: 1586738-1587334 bp Ori: QIF69443.1 Gene: slmA Feature: domain Description: slmA Location: 1586744-1587320 bp Feature: domain Description: slmA Location: 1586744-158732 0 bp Feature: gene Location: 1587441-1587896 bp Ori: QIF72075.1 Feature: domain Description: dut Location: 1587444-1587891 bp Feature: domain Description: dut Location: 1587444-1587891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: CP034256.1 Escherichia coli strain IVRI Kol CP4 plasmid pESBL-EA11pO83_CORR (28652 bp)
Overview 1 RT 1: 2128-5432 bp 2 RT 2: 12099-16430 bp Neighborhood of RT #1 [2128, 5488] RVT-Retrons Rve Neighborhood of RT #2 [12099, 16479] CspC RVT-Retrons Rve MPH2' Feature: gene Location: 2128-2394 bp Feature: gene Location: 2652-2852 bp Feature: gene Location: 2857-3939 bp Ori: QIF72341.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2944-3499 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2944-3 499 bp Feature: gene Location: 4569-4793 bp Feature: gene Location: 4784-5488 bp Ori: QIF72343.1 Feature: domain Description: Rve Location: 4787-5432 bp Feature: domain Description: Rve Location: 4787-543 2 bp Feature: gene Location: 12099-12366 bp Feature: gene Location: 12625-12827 bp Feature: domain Description: CspC Location: 12628-12736 bp Feature: domain Description: CspC Location: 12628-1273 6 bp Feature: gene Location: 12832-13970 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12976-13213 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12976-13 213 bp Feature: gene Location: 14754-15434 bp Feature: domain Description: Rve Location: 15054-15399 bp Feature: domain Description: Rve Location: 15054-153 99 bp Feature: gene Location: 15575-16479 bp Gene: mph(A) Feature: domain Description: MPH2' Location: 15617-16430 bp Feature: domain Description: MPH2' Location: 15617-1643 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Rve (COG3316), CspC (COG1278), MPH2' (cd05152)