myRT

myRT report for GCA_011045475.1_ASM1104547v1

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Seq: CP033160.1 Escherichia coli strain CM IVRI KOL-1 plasmid pESBL-EA11p1ESCUM (62055 bp)
Overview 1 RT 1: 36664-41869 bp Neighborhood of RT #1 [36664, 41874] RVT-GII Intron_maturas2 HNHc psiB Feature: gene Location: 36664-36978 bp Feature: gene Location: 37159-37365 bp Feature: gene Location: 38014-39915 bp Ori: QIF77003.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38281-39112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38281 -391 1 2 bp Feature: domain Description: Intron_maturas2 Location: 39226-39484 bp Feature: domain Description: Intron_maturas2 Location: 39226-39484 bp Feature: domain Description: HNHc Note: nucleases Location: 39658-39820 bp Feature: domain Description: HNHc Note: nucleases Location: 39658-39820 bp Feature: gene Location: 40098-41387 bp Feature: gene Location: 41440-41874 bp Ori: QIF77033.1 Gene: psiB Feature: domain Description: psiB Location: 41443-41869 bp Feature: domain Description: psiB Location: 41 443-41 869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), psiB (PRK13701)

Seq: CP033158.1 Escherichia coli strain CM IVRI KOL-1 chromosome, complete genome (4945239 bp)
Overview 1 RT 1: 1652194-1656477 bp 2 RT 2: 1953391-1956756 bp 3 RT 3: 3147675-3155180 bp 4 RT 4: 3166716-3170355 bp 5 RT 5: 3275510-3280109 bp 6 RT 6: 3636001-3644975 bp 7 RT 7: 4592135-4597173 bp Neighborhood of RT #1 [1652194, 1656485] RVT-GII RVT-GII GIIM YesM Neighborhood of RT #2 [1953391, 1957153] DUF1016_N PHA02517 RVT-GII GIIM InsE Neighborhood of RT #3 [3147675, 3155577] PRK09678 RVT-Retrons Arm-DNA-bind_3 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #4 [3166716, 3170522] InsE RVT-GII GIIM PHA02517 COG2085 Neighborhood of RT #5 [3275510, 3280111] Caudo_TAP SR_ResInv SR_ResInv RVT-Retrons TIR_2 PRK10597 prfC Neighborhood of RT #6 [3636001, 3645370] InsE RVT-GII PHA02517 DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 Neighborhood of RT #7 [4592135, 4597570] PHA02517 RVT-GII GIIM InsE Feature: gene Location: 1652194-1653099 bp Feature: gene Location: 1653073-1653360 bp Feature: gene Location: 1653585-1653976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1653915-1653975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1653915-1653975 bp Feature: gene Location: 1654152-1654673 bp Ori: QIF73775.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1654158-1654440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1654158-1654440 bp Feature: domain Description: GIIM Note: maturase Location: 1654488-1654668 bp Feature: domain Description: GIIM Note: maturase Location: 1654488-1654668 bp Feature: gene Location: 1654995-1655183 bp Feature: gene Location: 1655256-1656485 bp Ori: QIF76692.1 Feature: domain Description: YesM Location: 1655736-1656477 bp Feature: domain Description: YesM Location: 1655736-1656477 bp Feature: gene Location: 1953391-1953627 bp Feature: domain Description: DUF1016_N Location: 1953448-1953625 bp Feature: domain Description: DUF1016_N Location: 1953448-195362 5 bp Feature: gene Location: 1953670-1954143 bp Feature: domain Description: PHA02517 Location: 1953676-1954141 bp Feature: domain Description: PHA02 517 Location: 1953676-1954141 bp Feature: gene Location: 1954233-1955756 bp Ori: QIF74047.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1954506-1955238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1954506-19552 38 bp Feature: domain Description: GIIM Note: maturase Location: 1955313-1955511 bp Feature: domain Description: GIIM Note: maturase Location: 1955313-1955511 bp Feature: gene Location: 1956050-1956421 bp Feature: gene Location: 1956414-1957153 bp Feature: domain Description: InsE Location: 1956417-1956756 bp Feature: domain Description: InsE Location: 1956417-1956756 bp Feature: gene Location: 3147675-3147947 bp Ori: QIF75097.1 Feature: domain Description: PRK09678 Location: 3147684-3147840 bp Feature: domain Description: PRK09678 Location: 3147684-3147840 bp Feature: gene Location: 3148593-3149561 bp Feature: gene Location: 3149563-3150495 bp Ori: QIF75099.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3149665-3150259 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3149665-31502 59 bp Feature: gene Location: 3150950-3152091 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3150959-3151211 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3150959-31512 11 bp Feature: gene Location: 3152094-3152567 bp Feature: domain Description: PHA02517 Location: 3152100-3152565 bp Feature: domain Description: PHA02 517 Location: 3152 100-3152 565 bp Feature: gene Location: 3152657-3154180 bp Ori: QIF75100.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3152930-3153662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3152 930-3153662 bp Feature: domain Description: GIIM Note: maturase Location: 3153737-3153935 bp Feature: domain Description: GIIM Note: maturase Location: 3153737-3153935 bp Feature: gene Location: 3154474-3154845 bp Feature: gene Location: 3154838-3155577 bp Feature: domain Description: InsE Location: 3154841-3155180 bp Feature: domain Description: InsE Location: 3154841-3155180 bp Feature: gene Location: 3166716-3167433 bp Feature: domain Description: InsE Location: 3166755-3167004 bp Feature: domain Description: InsE Location: 3166755-3167004 bp Feature: gene Location: 3167429-3167797 bp Feature: gene Location: 3168091-3169614 bp Ori: QIF75113.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3168364-3169096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3168364-3169096 bp Feature: domain Description: GIIM Note: maturase Location: 3169171-3169369 bp Feature: domain Description: GIIM Note: maturase Location: 3169171-3169369 bp Feature: gene Location: 3169695-3170182 bp Feature: domain Description: PHA02517 Location: 3169698-3169869 bp Feature: domain Description: PHA02 517 Location: 3169698-3169869 bp Feature: gene Location: 3170109-3170522 bp Ori: QIF75114.1 Feature: domain Description: COG2085 Location: 3170208-3170355 bp Feature: domain Description: COG2 085 Location: 31702 08-3170355 bp Feature: gene Location: 3275510-3275638 bp Ori: QIF75219.1 Feature: domain Description: Caudo_TAP Location: 3275513-3275627 bp Feature: domain Description: Caudo_TAP Location: 32 75513-32 7562 7 bp Feature: gene Location: 3275696-3275945 bp Feature: domain Description: SR_ResInv Location: 3275708-3275819 bp Feature: domain Description: SR_ResInv Location: 32 75708-32 75819 bp Feature: domain Description: SR_ResInv Location: 3275822-3275885 bp Feature: domain Description: SR_ResInv Location: 32 7582 2 -32 75885 bp Feature: gene Location: 3276083-3277687 bp Ori: QIF75220.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3276374-3276965 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32 76374-32 76965 bp Feature: domain Description: TIR_2 Location: 3277292-3277625 bp Feature: domain Description: TIR_2 Location: 32 772 92 -32 7762 5 bp Feature: gene Location: 3278045-3278305 bp Ori: QIF75221.1 Feature: domain Description: PRK10597 Location: 3278048-3278288 bp Feature: domain Description: PRK10597 Location: 32 78048-32 782 88 bp Feature: gene Location: 3278525-3280111 bp Ori: QIF75222.1 Gene: prfC Feature: domain Description: prfC Location: 3278543-3280109 bp Feature: domain Description: prfC Location: 32 78543-32 80109 bp Feature: gene Location: 3636001-3636740 bp Feature: domain Description: InsE Location: 3636004-3636349 bp Feature: domain Description: InsE Location: 3636004-3636349 bp Feature: gene Location: 3636733-3637104 bp Feature: gene Location: 3637398-3638875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3637671-3637746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3637671-3637746 bp Feature: gene Location: 3638956-3639414 bp Feature: domain Description: PHA02517 Location: 3638959-3639406 bp Feature: domain Description: PHA02 517 Location: 3638959-3639406 bp Feature: gene Location: 3639635-3645370 bp Ori: QIF75516.1 Feature: domain Description: DUF4011 Location: 3639725-3640559 bp Feature: domain Description: DUF4011 Location: 363972 5-3640559 bp Feature: domain Description: DEXXQc_SF1 Location: 3640916-3644018 bp Feature: domain Description: DEXXQc_SF1 Location: 3640916-3644018 bp Feature: domain Description: SF1_C_Upf1 Location: 3644027-3644555 bp Feature: domain Description: SF1_C_Upf1 Location: 364402 7-3644555 bp Feature: domain Description: MTES_1575 Location: 3644684-3644975 bp Feature: domain Description: MTES_1575 Location: 3644684-3644975 bp Feature: gene Location: 4592135-4594045 bp Feature: gene Location: 4594087-4594560 bp Feature: domain Description: PHA02517 Location: 4594093-4594558 bp Feature: domain Description: PHA02 517 Location: 4594093-4594558 bp Feature: gene Location: 4594650-4596173 bp Ori: QIF76345.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4594923-4595655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459492 3-4595655 bp Feature: domain Description: GIIM Note: maturase Location: 4595730-4595928 bp Feature: domain Description: GIIM Note: maturase Location: 4595730-459592 8 bp Feature: gene Location: 4596467-4596838 bp Feature: gene Location: 4596831-4597570 bp Feature: domain Description: InsE Location: 4596834-4597173 bp Feature: domain Description: InsE Location: 4596834-4597173 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972), DUF1016_N (pfam17761), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356), COG2085 (Predicted dinucleotide-binding enzyme )
Caudo_TAP (pfam02413), SR_ResInv (cd03768), TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741)