myRT

myRT report for GCA_011066505.1_ASM1106650v1

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Seq: CP045264.1 Klebsiella pneumoniae strain 16HN-263 plasmid p16HN-263_KPC, complete sequence (129252 bp)
Overview 1 RT 1: 25767-29988 bp 2 RT 2: 85130-89212 bp Neighborhood of RT #1 [25767, 29988] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [85130, 89349] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 25767-26189 bp Ori: QIH61525.1 Feature: domain Description: DUF1380 Location: 25770-26064 bp Feature: domain Description: DUF1 380 Location: 25770-26064 bp Feature: gene Location: 26186-26377 bp Feature: gene Location: 26691-28358 bp Ori: QIH61527.1 Gene: ltrA Feature: domain Description: RVT_N Location: 26739-26976 bp Feature: domain Description: RVT_N Location: 26739-26976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27027-27669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27027-27669 bp Feature: domain Description: GIIM Note: maturase Location: 27720-27954 bp Feature: domain Description: GIIM Note: maturase Location: 27720-27954 bp Feature: domain Description: HNHc Note: nucleases Location: 28164-28323 bp Feature: domain Description: HNHc Note: nucleases Location: 281 64-28323 bp Feature: gene Location: 29238-29495 bp Feature: gene Location: 29758-29988 bp Feature: gene Location: 85130-85561 bp Ori: QIH61586.1 Gene: umuD Feature: domain Description: PRK10276 Location: 85181-85544 bp Feature: domain Description: PRK1 0276 Location: 851 81 -85544 bp Feature: gene Location: 85720-85971 bp Feature: gene Location: 85971-87455 bp Ori: QIH61588.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86373-87063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86373-87063 bp Feature: gene Location: 87704-88675 bp Ori: QIH61589.1 Feature: domain Description: StbA Location: 87707-88652 bp Feature: domain Description: StbA Location: 87707-88652 bp Feature: gene Location: 88678-89349 bp Ori: QIH61590.1 Feature: domain Description: Plasmid_stab_B Location: 88693-88900 bp Feature: domain Description: Plasmid_stab_B Location: 88693-88900 bp Feature: domain Description: Plasmid_stab_B Location: 89005-89212 bp Feature: domain Description: Plasmid_stab_B Location: 89005-8921 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: CP045263.1 Klebsiella pneumoniae strain 16HN-263 chromosome, complete genome (5598884 bp)
Overview 1 RT 1: 1239826-1244711 bp 2 RT 2: 1368972-1372698 bp 3 RT 3: 1896057-1900929 bp 4 RT 4: 1916670-1922932 bp 5 RT 5: 3172031-3176169 bp 6 RT 6: 3324355-3328454 bp 7 RT 7: 3397261-3401522 bp 8 RT 8: 3722001-3726839 bp 9 RT 9: 5109607-5114101 bp Neighborhood of RT #1 [1239826, 1244716] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1368972, 1372865] Beta_helix RVT-GII PRK10276 Neighborhood of RT #3 [1896057, 1900943] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1916670, 1922932] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3172031, 3176169] umuC PRK10276 RVT-GII Neighborhood of RT #6 [3324355, 3328465] umuC PRK10276 RVT-GII DinI Neighborhood of RT #7 [3397261, 3401560] PRK10597 RVT-GII PRK05318 Neighborhood of RT #8 [3722001, 3726889] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Neighborhood of RT #9 [5109607, 5114101] RVT-GII HTH_28 rve Feature: gene Location: 1239826-1242210 bp Ori: QIH57323.1 Feature: domain Description: Phage_GPA Location: 1240390-1241356 bp Feature: domain Description: Phage_GPA Location: 12 40390-12 41356 bp Feature: gene Location: 1242440-1242691 bp Feature: gene Location: 1242691-1244175 bp Ori: QIH57325.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1243093-1243783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 43093-12 43783 bp Feature: gene Location: 1244283-1244471 bp Feature: gene Location: 1244483-1244716 bp Ori: QIH57327.1 Feature: domain Description: DinI Location: 1244528-1244711 bp Feature: domain Description: DinI Location: 12 4452 8-12 44711 bp Feature: gene Location: 1368972-1370282 bp Ori: QIH57463.1 Feature: domain Description: Beta_helix Location: 1369419-1369935 bp Feature: domain Description: Beta_helix Location: 1369419-1369935 bp Feature: gene Location: 1370486-1370737 bp Feature: gene Location: 1370737-1372221 bp Ori: QIH57465.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1371139-1371829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1371139-137182 9 bp Feature: gene Location: 1372298-1372537 bp Feature: gene Location: 1372494-1372865 bp Ori: QIH57466.1 Feature: domain Description: PRK10276 Location: 1372539-1372698 bp Feature: domain Description: PRK102 76 Location: 1372 539-1372 698 bp Feature: gene Location: 1896057-1897226 bp Ori: QIH57921.1 Gene: dacD Feature: domain Description: dacD Location: 1896066-1897221 bp Feature: domain Description: dacD Location: 1896066-18972 2 1 bp Feature: gene Location: 1897496-1897747 bp Feature: gene Location: 1897747-1899231 bp Ori: QIH57923.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1898149-1898839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1898149-1898839 bp Feature: gene Location: 1899313-1899786 bp Ori: QIH57924.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1899316-1899775 bp Feature: domain Description: PRK10016 Location: 1899316-1899775 bp Feature: gene Location: 1899885-1900943 bp Ori: QIH57925.1 Feature: domain Description: YccC Location: 1899891-1900929 bp Feature: domain Description: YccC Location: 1899891-190092 9 bp Feature: gene Location: 1916670-1917773 bp Ori: QIH57944.1 Feature: domain Description: STKc_PknB_like Location: 1916802-1917243 bp Feature: domain Description: STKc_PknB_like Location: 1916802 -19172 43 bp Feature: gene Location: 1917843-1918085 bp Feature: gene Location: 1918332-1919432 bp Ori: QIH57945.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1918515-1919043 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1918515-1919043 bp Feature: gene Location: 1919547-1921793 bp Ori: QIH57946.1 Feature: domain Description: AAA_15 Location: 1919550-1920558 bp Feature: domain Description: AAA_15 Location: 1919550-192 0558 bp Feature: gene Location: 1922702-1922932 bp Feature: gene Location: 3172031-3173296 bp Ori: QIH59098.1 Gene: umuC Feature: domain Description: umuC Location: 3172034-3173294 bp Feature: domain Description: umuC Location: 3172 034-31732 94 bp Feature: gene Location: 3173298-3173717 bp Ori: QIH59099.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3173301-3173712 bp Feature: domain Description: PRK102 76 Location: 3173301-3173712 bp Feature: gene Location: 3173797-3175281 bp Ori: QIH59100.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3174199-3174889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3174199-3174889 bp Feature: gene Location: 3175281-3175532 bp Feature: gene Location: 3176080-3176169 bp Feature: gene Location: 3324355-3325620 bp Ori: QIH59246.1 Gene: umuC Feature: domain Description: umuC Location: 3324358-3325618 bp Feature: domain Description: umuC Location: 332 4358-332 5618 bp Feature: gene Location: 3325623-3326042 bp Ori: QIH59247.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3325626-3326037 bp Feature: domain Description: PRK102 76 Location: 332 562 6-332 6037 bp Feature: gene Location: 3326121-3327605 bp Ori: QIH59248.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3326523-3327213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332 652 3-332 72 13 bp Feature: gene Location: 3327605-3327856 bp Feature: gene Location: 3328223-3328465 bp Ori: QIH59250.1 Feature: domain Description: DinI Location: 3328274-3328454 bp Feature: domain Description: DinI Location: 332 82 74-332 8454 bp Feature: gene Location: 3397261-3397551 bp Feature: gene Location: 3397563-3397796 bp Ori: QIH59321.1 Feature: domain Description: PRK10597 Location: 3397566-3397791 bp Feature: domain Description: PRK10597 Location: 3397566-3397791 bp Feature: gene Location: 3397875-3399359 bp Ori: QIH59322.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3398277-3398967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33982 77-3398967 bp Feature: gene Location: 3399359-3399610 bp Feature: gene Location: 3400199-3401560 bp Ori: QIH59324.1 Gene: dgt Feature: domain Description: PRK05318 Location: 3400223-3401522 bp Feature: domain Description: PRK05318 Location: 34002 2 3-340152 2 bp Feature: gene Location: 3722001-3722879 bp Ori: QIH61421.1 Feature: domain Description: Phage_CI_repr Location: 3722028-3722211 bp Feature: domain Description: Phage_CI_repr Location: 372 2 02 8-372 2 2 11 bp Feature: domain Description: Phage_CI_repr Location: 3722340-3722532 bp Feature: domain Description: Phage_CI_repr Location: 372 2 340-372 2 532 bp Feature: domain Description: Phage_CI_C Location: 3722559-3722853 bp Feature: domain Description: Phage_CI_C Location: 372 2 559-372 2 853 bp Feature: gene Location: 3722891-3723835 bp Feature: gene Location: 3723934-3725418 bp Ori: QIH59616.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3724336-3725026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372 4336-372 502 6 bp Feature: gene Location: 3725418-3725669 bp Feature: gene Location: 3725837-3726889 bp Ori: QIH59618.1 Feature: domain Description: int Location: 3725840-3726839 bp Feature: domain Description: int Location: 372 5840-372 6839 bp Feature: gene Location: 5109607-5109921 bp Feature: gene Location: 5109988-5110227 bp Feature: gene Location: 5110360-5111844 bp Ori: QIH60824.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5110762-5111452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5110762 -5111452 bp Feature: gene Location: 5112037-5113440 bp Ori: QIH60825.1 Feature: domain Description: HTH_28 Location: 5112085-5112226 bp Feature: domain Description: HTH_2 8 Location: 5112 085-5112 2 2 6 bp Feature: domain Description: rve Location: 5112466-5112832 bp Feature: domain Description: rve Location: 5112 466-5112 832 bp Feature: gene Location: 5113469-5114101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), Beta_helix (pfam13229), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons
AAA_15 (pfam13175), umuC (PRK03609), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601), HTH_28 (pfam13518), rve (pfam00665)