myRT

myRT report for GCA_011068365.1_ASM1106836v1

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Seq: CP049604.1 Klebsiella pneumoniae strain Kp8701 chromosome, complete genome (5337408 bp)
Overview 1 RT 1: 728336-732695 bp 2 RT 2: 1435305-1439576 bp 3 RT 3: 1455393-1460868 bp 4 RT 4: 1971667-1974363 bp Neighborhood of RT #1 [728336, 732721] PRK09692 PRK09692 SLATT_5 RVT-UG17 Psu PRK09678 Neighborhood of RT #2 [1435305, 1439576] MPTase-PolyVal RVT-GII Intron_maturas2 HNHc ArdC Neighborhood of RT #3 [1455393, 1460882] HTH_XRE HTH_XRE RVT-UG2 traC_PFL_4706 conj_conj_conj_TIGR03751 Neighborhood of RT #4 [1971667, 1974363] Pox_D5 DUF5375 RVT-Retrons Feature: gene Location: 728336-729309 bp Feature: domain Description: PRK09692 Location: 728345-728708 bp Feature: domain Description: PRK09692 Location: 728345-728708 bp Feature: domain Description: PRK09692 Location: 728729-729101 bp Feature: domain Description: PRK09692 Location: 728729-7291 01 bp Feature: gene Location: 729362-730099 bp Ori: QII52406.1 Feature: domain Description: SLATT_5 Location: 729461-730064 bp Feature: domain Description: SLATT_5 Location: 729461 -730064 bp Feature: gene Location: 730198-731607 bp Ori: QII52407.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 730435-731047 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 730435-731 047 bp Feature: gene Location: 731934-732483 bp Feature: domain Description: Psu Location: 731952-732333 bp Feature: domain Description: Psu Location: 731 952-732333 bp Feature: gene Location: 732512-732721 bp Ori: QII56593.1 Feature: domain Description: PRK09678 Location: 732563-732695 bp Feature: domain Description: PRK09678 Location: 732563-732695 bp Feature: gene Location: 1435305-1435676 bp Feature: gene Location: 1435741-1435935 bp Feature: domain Description: MPTase-PolyVal Location: 1435744-1435867 bp Feature: domain Description: MPTase-PolyVal Location: 1 435744-1 435867 bp Feature: gene Location: 1436010-1437869 bp Ori: QII53021.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1436277-1437108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 436277-1 4371 08 bp Feature: domain Description: Intron_maturas2 Location: 1437198-1437480 bp Feature: domain Description: Intron_maturas2 Location: 1 4371 98-1 437480 bp Feature: domain Description: HNHc Note: nucleases Location: 1437624-1437801 bp Feature: domain Description: HNHc Note: nucleases Location: 1 437624-1 437801 bp Feature: gene Location: 1438511-1439221 bp Feature: domain Description: ArdC Location: 1438526-1439222 bp Feature: domain Description: ArdC Location: 1 438526-1 439222 bp Feature: gene Location: 1439286-1439576 bp Feature: gene Location: 1455393-1455623 bp Ori: QII53037.1 Feature: domain Description: HTH_XRE Location: 1455435-1455603 bp Feature: domain Description: HTH_XRE Location: 1 455435-1 455603 bp Feature: gene Location: 1455706-1455933 bp Ori: QII53038.1 Feature: domain Description: HTH_XRE Location: 1455748-1455910 bp Feature: domain Description: HTH_XRE Location: 1 455748-1 45591 0 bp Feature: gene Location: 1456131-1457408 bp Ori: QII53039.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1456329-1457115 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 456329-1 4571 1 5 bp Feature: gene Location: 1457896-1460526 bp Feature: domain Description: traC_PFL_4706 Location: 1457935-1460515 bp Feature: domain Description: traC_PFL_4706 Location: 1 457935-1 46051 5 bp Feature: gene Location: 1460523-1460882 bp Ori: QII53040.1 Feature: domain Description: conj_conj_conj_TIGR03751 Location: 1460541-1460868 bp Feature: domain Description: conj_conj_conj_TIGR03751 Location: 1 460541 -1 460868 bp Feature: gene Location: 1971667-1971948 bp Ori: QII53469.1 Feature: domain Description: Pox_D5 Location: 1971742-1971922 bp Feature: domain Description: Pox_D5 Location: 1 971 742-1 971 922 bp Feature: gene Location: 1971855-1971995 bp Ori: QII56653.1 Feature: domain Description: DUF5375 Location: 1971870-1971930 bp Feature: domain Description: DUF5375 Location: 1 971 870-1 971 930 bp Feature: gene Location: 1971991-1973487 bp Ori: QII53470.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1972696-1973251 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 972696-1 973251 bp Feature: gene Location: 1973488-1974170 bp Feature: gene Location: 1974172-1974363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), SLATT_5 (pfam18160), RVT-UG17, Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional), MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), ArdC (COG4227)
HTH_XRE (smart00530), RVT-UG2, traC_PFL_4706 (TIGR03744), conj_conj_conj_TIGR03751, Pox_D5 (pfam03288), DUF5375 (pfam17345), RVT-Retrons