myRT

myRT report for GCA_011100465.1_ASM1110046v1

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Seq: CP049740.1 Jeotgalibaca arthritidis strain CECT 9157 chromosome, complete genome (2348096 bp)
Overview 1 RT 1: 228872-238470 bp Neighborhood of RT #1 [228872, 238478] COG4646 KOG1000 RVT-GII Intron_maturas2 HNHc YtxK COG4646 TnpV Feature: gene Location: 228872-229207 bp Feature: gene Location: 229207-231210 bp Ori: QII81211.1 Feature: domain Description: COG4646 Location: 229318-229738 bp Feature: domain Description: COG4646 Location: 22931 8-229738 bp Feature: domain Description: KOG1000 Location: 230110-230482 bp Feature: domain Description: KOG1 000 Location: 2301 1 0-230482 bp Feature: gene Location: 231214-233022 bp Ori: QII81212.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231478-232297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 478-232297 bp Feature: domain Description: Intron_maturas2 Location: 232366-232711 bp Feature: domain Description: Intron_maturas2 Location: 232366-23271 1 bp Feature: domain Description: HNHc Note: nucleases Location: 232846-232993 bp Feature: domain Description: HNHc Note: nucleases Location: 232846-232993 bp Feature: gene Location: 233614-236853 bp Feature: domain Description: YtxK Location: 234109-234655 bp Feature: domain Description: YtxK Location: 2341 09-234655 bp Feature: domain Description: COG4646 Location: 234703-236851 bp Feature: domain Description: COG4646 Location: 234703-236851 bp Feature: gene Location: 238113-238478 bp Ori: QII81213.1 Feature: domain Description: TnpV Location: 238128-238470 bp Feature: domain Description: TnpV Location: 2381 28-238470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YtxK (COG0827), TnpV (pfam14198)