myRT

myRT report for GCA_011106835.1_ASM1110683v1

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Seq: CP045857.1 Shewanella chilikensis strain DC57 chromosome, complete genome (4910425 bp)
Overview 1 RT 1: 1530015-1535319 bp 2 RT 2: 4427936-4432467 bp 3 RT 3: 4608892-4612090 bp Neighborhood of RT #1 [1530015, 1535319] AvtA RVT-Retrons Trypsin_2 SEC-C Neighborhood of RT #2 [4427936, 4433138] RVT-Retrons COG4584 Neighborhood of RT #3 [4608892, 4612146] COG3415 RVT-GII LysR PTDH Feature: gene Location: 1530015-1530323 bp Feature: gene Location: 1530590-1531843 bp Ori: QIJ03968.1 Feature: domain Description: AvtA Location: 1530593-1531835 bp Feature: domain Description: AvtA Location: 1 530593-1 531 835 bp Feature: gene Location: 1532168-1533883 bp Ori: QIJ03969.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1532357-1532960 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 532357-1 532960 bp Feature: domain Description: Trypsin_2 Location: 1533347-1533767 bp Feature: domain Description: Trypsin_2 Location: 1 533347-1 533767 bp Feature: gene Location: 1534148-1534471 bp Ori: QIJ03970.1 Feature: domain Description: SEC-C Location: 1534169-1534220 bp Feature: domain Description: SEC-C Location: 1 5341 69-1 534220 bp Feature: gene Location: 1534474-1535319 bp Feature: gene Location: 4427936-4428436 bp Feature: gene Location: 4428429-4429166 bp Feature: gene Location: 4429168-4430286 bp Ori: QIJ06215.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4429564-4430098 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4429564-4430098 bp Feature: gene Location: 4430632-4431321 bp Feature: gene Location: 4431618-4433138 bp Ori: QIJ06217.1 Feature: domain Description: COG4584 Location: 4431726-4432467 bp Feature: domain Description: COG4584 Location: 4431 726-4432467 bp Feature: gene Location: 4608892-4609343 bp Ori: QIJ06369.1 Feature: domain Description: COG3415 Location: 4608931-4609339 bp Feature: domain Description: COG341 5 Location: 4608931 -4609339 bp Feature: gene Location: 4608317-4608893 bp Feature: gene Location: 4609522-4610367 bp Ori: QIJ06871.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4609723-4610314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4609723-461 031 4 bp Feature: gene Location: 4610282-4611142 bp Ori: QIJ06370.1 Feature: domain Description: LysR Location: 4610291-4611134 bp Feature: domain Description: LysR Location: 461 0291 -461 1 1 34 bp Feature: gene Location: 4611136-4612146 bp Ori: QIJ06371.1 Feature: domain Description: PTDH Location: 4611142-4612090 bp Feature: domain Description: PTDH Location: 461 1 1 42-461 2090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AvtA (COG3977), RVT-Retrons, Trypsin_2 (pfam13365), SEC-C (pfam02810), COG4584 (Transposase ), COG3415 (Transposase ), RVT-GII, LysR (COG0583), PTDH (cd12157)