myRT

myRT report for GCA_011106855.1_ASM1110685v1

Download annotations/find similar RTs

Seq: CP045858.1 Pseudomonas balearica strain EC28 chromosome, complete genome (4642566 bp)
Overview 1 RT 1: 429020-437399 bp 2 RT 2: 1655419-1662034 bp 3 RT 3: 1896453-1905164 bp 4 RT 4: 2653538-2664949 bp 5 RT 5: 2706378-2711018 bp 6 RT 6: 3389695-3397732 bp 7 RT 7: 4209703-4215014 bp 8 RT 8: 4588024-4594746 bp Neighborhood of RT #1 [429020, 437419] FDH-beta formate-DH-alph RVT-GII GIIM Tim44 FcbT1 Neighborhood of RT #2 [1655419, 1662063] cls GATase1_PfpI_1 RVT-GII GIIM zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 TtdA FumA Neighborhood of RT #3 [1896453, 1905166] PRK12492 PRK05677 RVT-GII GIIM COG3464 Cache_2 Tar Neighborhood of RT #4 [2653538, 2665623] COG4637 YeeA RVT-UG5 DUF772 RVT-GII GIIM RVT_N RVT-GII IstB_IS21 COG4584 Neighborhood of RT #5 [2706378, 2711188] PhoE SCP2 RVT-GII GIIM zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 Zn-ribbon_8 Neighborhood of RT #6 [3389695, 3397779] PRK00153 PRK07994 RVT_N RVT-GII YkfC HNHc PRK00257 PRK01766 Neighborhood of RT #7 [4209703, 4215043] DUF2845 DUF2845 RVT-GII GIIM OsmY polynuc_phos Neighborhood of RT #8 [4588024, 4594772] Rho COG3464 RVT-GII GIIM trxA GppA Feature: gene Location: 429020-429955 bp Ori: QIJ02522.1 Gene: fdxH Feature: domain Description: FDH-beta Location: 429035-429875 bp Feature: domain Description: FDH-beta Location: 429035-429875 bp Feature: gene Location: 429955-433029 bp Ori: QII98918.1 Gene: fdnG Feature: domain Description: formate-DH-alph Location: 429964-433024 bp Feature: domain Description: formate-DH-alph Location: 429964-433024 bp Feature: gene Location: 433468-434865 bp Ori: QII98919.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433801-434416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433801 -43441 6 bp Feature: domain Description: GIIM Note: maturase Location: 434470-434698 bp Feature: domain Description: GIIM Note: maturase Location: 434470-434698 bp Feature: gene Location: 435371-436210 bp Ori: QII98920.1 Feature: domain Description: Tim44 Location: 435473-436205 bp Feature: domain Description: Tim44 Location: 435473-436205 bp Feature: gene Location: 436319-437419 bp Ori: QII98921.1 Feature: domain Description: FcbT1 Location: 436421-437399 bp Feature: domain Description: FcbT1 Location: 436421 -437399 bp Feature: gene Location: 1655419-1656585 bp Ori: QII99984.1 Feature: domain Description: cls Location: 1655446-1656538 bp Feature: domain Description: cls Location: 1 655446-1 656538 bp Feature: gene Location: 1656670-1657251 bp Ori: QII99985.1 Feature: domain Description: GATase1_PfpI_1 Location: 1656685-1657231 bp Feature: domain Description: GATase1 _PfpI_1 Location: 1 656685-1 657231 bp Feature: gene Location: 1657747-1659144 bp Ori: QII99986.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1658080-1658695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 658080-1 658695 bp Feature: domain Description: GIIM Note: maturase Location: 1658749-1658977 bp Feature: domain Description: GIIM Note: maturase Location: 1 658749-1 658977 bp Feature: gene Location: 1659313-1660515 bp Ori: QII99987.1 Feature: domain Description: zf-ISL3 Location: 1659424-1659559 bp Feature: domain Description: zf-ISL3 Location: 1 659424-1 659559 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1659574-1659721 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1 659574-1 659721 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1659769-1660486 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 659769-1 660486 bp Feature: gene Location: 1660540-1662063 bp Ori: QII99988.1 Feature: domain Description: TtdA Location: 1660543-1661437 bp Feature: domain Description: TtdA Location: 1 660543-1 661 437 bp Feature: domain Description: FumA Location: 1661488-1662034 bp Feature: domain Description: FumA Location: 1 661 488-1 662034 bp Feature: gene Location: 1896453-1898141 bp Ori: QIJ00208.1 Feature: domain Description: PRK12492 Location: 1896456-1898139 bp Feature: domain Description: PRK1 2492 Location: 1 896456-1 8981 39 bp Feature: gene Location: 1898350-1900041 bp Ori: QIJ00209.1 Feature: domain Description: PRK05677 Location: 1898353-1900030 bp Feature: domain Description: PRK05677 Location: 1 898353-1 900030 bp Feature: gene Location: 1900548-1901945 bp Ori: QIJ00210.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1900881-1901496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 900881 -1 901 496 bp Feature: domain Description: GIIM Note: maturase Location: 1901550-1901778 bp Feature: domain Description: GIIM Note: maturase Location: 1 901 550-1 901 778 bp Feature: gene Location: 1902021-1903226 bp Ori: QIJ00211.1 Feature: domain Description: COG3464 Location: 1902105-1903191 bp Feature: domain Description: COG3464 Location: 1 9021 05-1 9031 91 bp Feature: gene Location: 1903481-1905166 bp Ori: QIJ02580.1 Feature: domain Description: Cache_2 Location: 1903628-1903889 bp Feature: domain Description: Cache_2 Location: 1 903628-1 903889 bp Feature: domain Description: Tar Location: 1903994-1905164 bp Feature: domain Description: Tar Location: 1 903994-1 9051 64 bp Feature: gene Location: 2653538-2654704 bp Ori: QIJ00869.1 Feature: domain Description: COG4637 Location: 2653544-2654654 bp Feature: domain Description: COG4637 Location: 2653544-2654654 bp Feature: gene Location: 2654722-2656497 bp Ori: QIJ00870.1 Gene: pglX Feature: domain Description: YeeA Location: 2654767-2656360 bp Feature: domain Description: YeeA Location: 2654767-2656360 bp Feature: gene Location: 2656494-2659013 bp Ori: QIJ02624.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2656500-2656962 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2656500-2656962 bp Feature: gene Location: 2659595-2660107 bp Feature: domain Description: DUF772 Location: 2659745-2659931 bp Feature: domain Description: DUF772 Location: 2659745-2659931 bp Feature: gene Location: 2660627-2661895 bp Ori: QIJ00871.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2660840-2661497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2660840-2661 497 bp Feature: domain Description: GIIM Note: maturase Location: 2661575-2661797 bp Feature: domain Description: GIIM Note: maturase Location: 2661 575-2661 797 bp Feature: gene Location: 2662571-2663173 bp Ori: QIJ00872.1 Feature: domain Description: RVT_N Location: 2662652-2662877 bp Feature: domain Description: RVT_N Location: 2662652-2662877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2662928-2663147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2662928-26631 47 bp Feature: gene Location: 2663328-2664131 bp Ori: QIJ00873.1 Feature: domain Description: IstB_IS21 Location: 2663484-2664012 bp Feature: domain Description: IstB_IS21 Location: 2663484-266401 2 bp Feature: gene Location: 2664124-2665623 bp Ori: QIJ02625.1 Feature: domain Description: COG4584 Location: 2664163-2664949 bp Feature: domain Description: COG4584 Location: 26641 63-2664949 bp Feature: gene Location: 2706378-2707088 bp Ori: QIJ00904.1 Feature: domain Description: PhoE Location: 2706381-2707041 bp Feature: domain Description: PhoE Location: 2706381 -2707041 bp Feature: gene Location: 2707138-2707452 bp Ori: QIJ00905.1 Feature: domain Description: SCP2 Location: 2707174-2707444 bp Feature: domain Description: SCP2 Location: 27071 74-2707444 bp Feature: gene Location: 2707979-2709376 bp Ori: QIJ00906.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2708312-2708927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270831 2-2708927 bp Feature: domain Description: GIIM Note: maturase Location: 2708981-2709209 bp Feature: domain Description: GIIM Note: maturase Location: 2708981 -2709209 bp Feature: gene Location: 2709545-2710747 bp Ori: QIJ00907.1 Feature: domain Description: zf-ISL3 Location: 2709656-2709791 bp Feature: domain Description: zf-ISL3 Location: 2709656-2709791 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 2709806-2709953 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 2709806-2709953 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 2710001-2710718 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 271 0001 -271 071 8 bp Feature: gene Location: 2710940-2711188 bp Ori: QIJ00908.1 Feature: domain Description: Zn-ribbon_8 Location: 2710943-2711018 bp Feature: domain Description: Zn-ribbon_8 Location: 271 0943-271 1 01 8 bp Feature: gene Location: 3389695-3390021 bp Ori: QIJ01444.1 Feature: domain Description: PRK00153 Location: 3389701-3390013 bp Feature: domain Description: PRK001 53 Location: 3389701 -339001 3 bp Feature: gene Location: 3390031-3392070 bp Ori: QIJ01445.1 Feature: domain Description: PRK07994 Location: 3390034-3392044 bp Feature: domain Description: PRK07994 Location: 3390034-3392044 bp Feature: gene Location: 3392221-3393960 bp Ori: QIJ01446.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3392281-3392524 bp Feature: domain Description: RVT_N Location: 3392281 -3392524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3392572-3393223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3392572-3393223 bp Feature: domain Description: YkfC Location: 3393388-3393586 bp Feature: domain Description: YkfC Location: 3393388-3393586 bp Feature: domain Description: HNHc Note: nucleases Location: 3393757-3393913 bp Feature: domain Description: HNHc Note: nucleases Location: 3393757-339391 3 bp Feature: gene Location: 3395087-3396262 bp Ori: QIJ01447.1 Gene: pdxB Feature: domain Description: PRK00257 Location: 3395090-3396224 bp Feature: domain Description: PRK00257 Location: 3395090-3396224 bp Feature: gene Location: 3396370-3397779 bp Ori: QIJ01448.1 Feature: domain Description: PRK01766 Location: 3396388-3397732 bp Feature: domain Description: PRK01 766 Location: 3396388-3397732 bp Feature: gene Location: 4209703-4210002 bp Ori: QIJ02138.1 Feature: domain Description: DUF2845 Location: 4209772-4209988 bp Feature: domain Description: DUF2845 Location: 4209772-4209988 bp Feature: gene Location: 4210032-4210400 bp Ori: QIJ02139.1 Feature: domain Description: DUF2845 Location: 4210080-4210305 bp Feature: domain Description: DUF2845 Location: 421 0080-421 0305 bp Feature: gene Location: 4210384-4211781 bp Ori: QIJ02140.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4210717-4211332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421 071 7-421 1 332 bp Feature: domain Description: GIIM Note: maturase Location: 4211386-4211614 bp Feature: domain Description: GIIM Note: maturase Location: 421 1 386-421 1 61 4 bp Feature: gene Location: 4212287-4212676 bp Ori: QIJ02141.1 Feature: domain Description: OsmY Location: 4212398-4212656 bp Feature: domain Description: OsmY Location: 421 2398-421 2656 bp Feature: gene Location: 4212935-4215043 bp Ori: QIJ02142.1 Gene: pnp Feature: domain Description: polynuc_phos Location: 4212962-4215014 bp Feature: domain Description: polynuc_phos Location: 421 2962-421 501 4 bp Feature: gene Location: 4588024-4589283 bp Ori: QIJ02461.1 Gene: rho Feature: domain Description: Rho Location: 4588027-4589278 bp Feature: domain Description: Rho Location: 4588027-4589278 bp Feature: gene Location: 4589569-4590774 bp Ori: QIJ02462.1 Feature: domain Description: COG3464 Location: 4589674-4590739 bp Feature: domain Description: COG3464 Location: 4589674-4590739 bp Feature: gene Location: 4590850-4592247 bp Ori: QIJ02463.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4591183-4591798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4591 1 83-4591 798 bp Feature: domain Description: GIIM Note: maturase Location: 4591852-4592080 bp Feature: domain Description: GIIM Note: maturase Location: 4591 852-4592080 bp Feature: gene Location: 4592754-4593080 bp Ori: QIJ02464.1 Gene: trxA Feature: domain Description: trxA Location: 4592757-4593078 bp Feature: domain Description: trxA Location: 4592757-4593078 bp Feature: gene Location: 4593270-4594772 bp Ori: QIJ02465.1 Gene: ppx Feature: domain Description: GppA Location: 4593300-4594746 bp Feature: domain Description: GppA Location: 4593300-4594746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FDH-beta (TIGR01582), formate-DH-alph (TIGR01553), RVT-GII, GIIM (pfam08388), Tim44 (smart00978), FcbT1 (COG4663), cls, GATase1_PfpI_1 (cd03169), zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542)
DDE_Tnp_ISL3 (pfam01610), TtdA (COG1951), FumA (COG1838), PRK12492 (long-chain-fatty-acid--CoA ligase; Provisional), PRK05677 (long-chain-fatty-acid--CoA ligase; Validated), COG3464 (Transposase ), Cache_2 (smart01049), Tar (COG0840), COG4637 (Predicted ATPase ), YeeA (COG1002)
RVT-UG5, DUF772 (pfam05598), RVT_N (pfam13655), IstB_IS21 (pfam01695), COG4584 (Transposase ), PhoE (COG0406), SCP2 (pfam02036), Zn-ribbon_8 (pfam09723), PRK00153 (YbaB/EbfC family nucleoid-associated protein), PRK07994 (DNA polymerase III subunits gamma and tau; Validated)
YkfC (COG3344), HNHc (smart00507), PRK00257 (4-phosphoerythronate dehydrogenase PdxB), PRK01766 (multidrug efflux protein; Reviewed), DUF2845 (pfam11006), OsmY (COG2823), polynuc_phos (TIGR03591), Rho (COG1158), trxA (PRK09381), GppA (COG0248)