myRT

myRT report for GCA_011290565.1_ASM1129056v1

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Seq: CP049799.1 Streptococcus pyogenes strain 1040 chromosome, complete genome (1832686 bp)
Overview 1 RT 1: 1583445-1595049 bp 2 RT 2: 1619060-1623330 bp Neighborhood of RT #1 [1583445, 1595078] COG2433 RVT_N RVT-GII GIIM PHA03411 COG4646 HELICc Cyt_C5_DNA_methylase Neighborhood of RT #2 [1619060, 1623398] OmpR YozG RVT-GII HNHc Maff2 SSB_OBF Feature: gene Location: 1583445-1584101 bp Feature: gene Location: 1584145-1585473 bp Ori: QIK43954.1 Feature: domain Description: COG2433 Location: 1584658-1585225 bp Feature: domain Description: COG2433 Location: 1 584658-1 585225 bp Feature: gene Location: 1585607-1587277 bp Ori: QIK43955.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1585652-1585895 bp Feature: domain Description: RVT_N Location: 1 585652-1 585895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1585940-1586588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 585940-1 586588 bp Feature: domain Description: GIIM Note: maturase Location: 1586642-1586873 bp Feature: domain Description: GIIM Note: maturase Location: 1 586642-1 586873 bp Feature: gene Location: 1587833-1594126 bp Ori: QIK43956.1 Feature: domain Description: PHA03411 Location: 1590347-1590653 bp Feature: domain Description: PHA0341 1 Location: 1 590347-1 590653 bp Feature: domain Description: COG4646 Location: 1590968-1593632 bp Feature: domain Description: COG4646 Location: 1 590968-1 593632 bp Feature: domain Description: HELICc Location: 1593680-1594046 bp Feature: domain Description: HELICc Location: 1 593680-1 594046 bp Feature: gene Location: 1594113-1595078 bp Ori: QIK43957.1 Gene: dcm Feature: domain Description: Cyt_C5_DNA_methylase Location: 1594128-1595049 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 1 5941 28-1 595049 bp Feature: gene Location: 1619060-1619752 bp Ori: QIK43980.1 Feature: domain Description: OmpR Location: 1619069-1619744 bp Feature: domain Description: OmpR Location: 1 61 9069-1 61 9744 bp Feature: gene Location: 1619797-1620015 bp Ori: QIK43981.1 Feature: domain Description: YozG Location: 1619809-1620007 bp Feature: domain Description: YozG Location: 1 61 9809-1 620007 bp Feature: gene Location: 1620372-1622231 bp Ori: QIK43982.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1620690-1621428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 620690-1 621 428 bp Feature: domain Description: HNHc Note: nucleases Location: 1621959-1622121 bp Feature: domain Description: HNHc Note: nucleases Location: 1 621 959-1 6221 21 bp Feature: gene Location: 1622954-1623085 bp Ori: QIK43983.1 Feature: domain Description: Maff2 Location: 1622957-1623083 bp Feature: domain Description: Maff2 Location: 1 622957-1 623083 bp Feature: gene Location: 1623087-1623398 bp Ori: QIK43984.1 Feature: domain Description: SSB_OBF Location: 1623111-1623330 bp Feature: domain Description: SSB_OBF Location: 1 6231 1 1 -1 623330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2433 (Possible nuclease of RNase H fold, RuvC/YqgF family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PHA03411 (putative methyltransferase; Provisional), COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490), Cyt_C5_DNA_methylase (cl30459), OmpR (COG0745), YozG (COG3655)
HNHc (smart00507), Maff2 (pfam12750), SSB_OBF (cd04496)