myRT

myRT report for GCA_011304195.1_ASM1130419v1

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Seq: CP049887.1 Vagococcus sp. HDW17B chromosome, complete genome (3045783 bp)
Overview 1 RT 1: 224187-229418 bp 2 RT 2: 893230-900035 bp 3 RT 3: 1663044-1670516 bp 4 RT 4: 1709139-1713738 bp Neighborhood of RT #1 [224187, 229418] STKc_PknB_like RVT-GII GIIM AbiEii Neighborhood of RT #2 [893230, 900037] MrcB RluA RVT-GII GIIM AzoR YafY Neighborhood of RT #3 [1663044, 1670536] RVT-GII GIIM PLDc_N_DEXD_c DEXDc_RapA SF2_C_SNF DUF4391 Neighborhood of RT #4 [1709139, 1713767] PRK04125 PRK04288 RVT-GII GIIM HisM GlnQ Feature: gene Location: 224187-225482 bp Ori: QIL47240.1 Feature: domain Description: STKc_PknB_like Location: 224193-224766 bp Feature: domain Description: STKc_PknB_like Location: 2241 93-224766 bp Feature: gene Location: 225755-226402 bp Feature: gene Location: 226533-227810 bp Ori: QIL47242.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226743-227364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226743-227364 bp Feature: domain Description: GIIM Note: maturase Location: 227421-227637 bp Feature: domain Description: GIIM Note: maturase Location: 227421 -227637 bp Feature: gene Location: 228597-229124 bp Ori: QIL47243.1 Feature: domain Description: AbiEii Location: 228645-228918 bp Feature: domain Description: AbiEii Location: 228645-22891 8 bp Feature: gene Location: 229128-229418 bp Feature: gene Location: 893230-895371 bp Ori: QIL47824.1 Feature: domain Description: MrcB Location: 893329-895219 bp Feature: domain Description: MrcB Location: 893329-89521 9 bp Feature: gene Location: 895551-896438 bp Ori: QIL47825.1 Feature: domain Description: RluA Location: 895584-896400 bp Feature: domain Description: RluA Location: 895584-896400 bp Feature: gene Location: 896508-897785 bp Ori: QIL47826.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 896718-897339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89671 8-897339 bp Feature: domain Description: GIIM Note: maturase Location: 897396-897612 bp Feature: domain Description: GIIM Note: maturase Location: 897396-89761 2 bp Feature: gene Location: 898374-899012 bp Ori: QIL47827.1 Feature: domain Description: AzoR Location: 898380-898950 bp Feature: domain Description: AzoR Location: 898380-898950 bp Feature: gene Location: 899102-900037 bp Ori: QIL47828.1 Feature: domain Description: YafY Location: 899105-900035 bp Feature: domain Description: YafY Location: 8991 05-900035 bp Feature: gene Location: 1663044-1664069 bp Feature: gene Location: 1664041-1664220 bp Feature: gene Location: 1664825-1666102 bp Ori: QIL48511.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1665035-1665656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 665035-1 665656 bp Feature: domain Description: GIIM Note: maturase Location: 1665713-1665929 bp Feature: domain Description: GIIM Note: maturase Location: 1 66571 3-1 665929 bp Feature: gene Location: 1666555-1669812 bp Ori: QIL48512.1 Feature: domain Description: PLDc_N_DEXD_c Location: 1666579-1667041 bp Feature: domain Description: PLDc_N_DEXD_c Location: 1 666579-1 667041 bp Feature: domain Description: DEXDc_RapA Location: 1667305-1667875 bp Feature: domain Description: DEXDc_RapA Location: 1 667305-1 667875 bp Feature: domain Description: SF2_C_SNF Location: 1668505-1669057 bp Feature: domain Description: SF2_C_SNF Location: 1 668505-1 669057 bp Feature: gene Location: 1669823-1670536 bp Ori: QIL48513.1 Feature: domain Description: DUF4391 Location: 1669856-1670516 bp Feature: domain Description: DUF4391 Location: 1 669856-1 67051 6 bp Feature: gene Location: 1709139-1709567 bp Ori: QIL48542.1 Gene: lrgA Feature: domain Description: PRK04125 Location: 1709142-1709547 bp Feature: domain Description: PRK041 25 Location: 1 7091 42-1 709547 bp Feature: gene Location: 1709569-1710252 bp Ori: QIL48543.1 Gene: lrgB Feature: domain Description: PRK04288 Location: 1709572-1710244 bp Feature: domain Description: PRK04288 Location: 1 709572-1 71 0244 bp Feature: gene Location: 1711073-1712350 bp Ori: QIL48544.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1711283-1711904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 1 283-1 71 1 904 bp Feature: domain Description: GIIM Note: maturase Location: 1711961-1712177 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 1 961 -1 71 21 77 bp Feature: gene Location: 1712464-1713114 bp Ori: QIL48545.1 Feature: domain Description: HisM Location: 1712476-1713094 bp Feature: domain Description: HisM Location: 1 71 2476-1 71 3094 bp Feature: gene Location: 1713126-1713767 bp Ori: QIL48546.1 Feature: domain Description: GlnQ Location: 1713129-1713738 bp Feature: domain Description: GlnQ Location: 1 71 31 29-1 71 3738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), RVT-GII, GIIM (pfam08388), AbiEii (pfam08843), MrcB (COG0744), RluA (COG0564), AzoR (COG1182), YafY (COG2378), PLDc_N_DEXD_c (cd10311), DEXDc_RapA (cd18011)
SF2_C_SNF (cd18793), DUF4391 (pfam14335), PRK04125 (antiholin-like protein LrgA), PRK04288 (antiholin-like protein LrgB; Provisional), HisM (COG0765), GlnQ (COG1126)