myRT

myRT report for GCA_011326135.1_ASM1132613v1

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Seq: CP046948.1 Microbulbifer sp. SH-1 chromosome, complete genome (4684771 bp)
Overview 1 RT 1: 5482-10881 bp 2 RT 2: 621826-626796 bp 3 RT 3: 952689-956927 bp 4 RT 4: 1718668-1728323 bp 5 RT 5: 1794320-1800988 bp 6 RT 6: 3093134-3099781 bp 7 RT 7: 4285163-4291146 bp Neighborhood of RT #1 [5482, 10881] Zn_Tnp_IS91 Y2_Tnp Phage_int_SAM_4 INT_IntI_C RVT_N RVT-GII GIIM Acetyltransf_10 Neighborhood of RT #2 [621826, 626945] DUF5063 RVT_N RVT-GII GIIM Zn_Tnp_IS91 Y2_Tnp Neighborhood of RT #3 [952689, 956932] NPD_like COG3865 RVT-GII COG3865 PRK10996 Neighborhood of RT #4 [1718668, 1728328] DUF695 RVT_N RVT-GII GIIM CzcD PRK05297 Neighborhood of RT #5 [1794320, 1801224] PRK07478 VOC_like RVT-GII DUF4304 PIN7 Neighborhood of RT #6 [3093134, 3099858] InsE RVT-GII Phage_int_SAM_4 INT_IntI_C Neighborhood of RT #7 [4285163, 4291146] RVT_N RVT-GII GIIM DUF2806 Feature: gene Location: 5482-6528 bp Ori: QIL88337.1 Feature: domain Description: Zn_Tnp_IS91 Location: 5500-5773 bp Feature: domain Description: Zn_Tnp_IS91 Location: 5500-5773 bp Feature: domain Description: Y2_Tnp Location: 5899-6379 bp Feature: domain Description: Y2_Tnp Location: 5899-6379 bp Feature: gene Location: 6530-7429 bp Ori: QIL88338.1 Feature: domain Description: Phage_int_SAM_4 Location: 6566-6806 bp Feature: domain Description: Phage_int_SAM_4 Location: 6566-6806 bp Feature: domain Description: INT_IntI_C Location: 6845-7352 bp Feature: domain Description: INT_IntI_C Location: 6845-7352 bp Feature: gene Location: 8268-9812 bp Ori: QIL88339.1 Gene: ltrA Feature: domain Description: RVT_N Location: 8382-8592 bp Feature: domain Description: RVT_N Location: 8382-8592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8646-9273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8646-9273 bp Feature: domain Description: GIIM Note: maturase Location: 9324-9552 bp Feature: domain Description: GIIM Note: maturase Location: 9324-9552 bp Feature: gene Location: 9975-10442 bp Ori: QIL88340.1 Feature: domain Description: Acetyltransf_10 Location: 10110-10413 bp Feature: domain Description: Acetyltransf_1 0 Location: 1 01 1 0-1 041 3 bp Feature: gene Location: 10558-10881 bp Feature: gene Location: 621826-622221 bp Feature: gene Location: 622386-622835 bp Ori: QIL88802.1 Feature: domain Description: DUF5063 Location: 622530-622827 bp Feature: domain Description: DUF5063 Location: 622530-622827 bp Feature: gene Location: 623584-625128 bp Ori: QIL88803.1 Gene: ltrA Feature: domain Description: RVT_N Location: 623695-623917 bp Feature: domain Description: RVT_N Location: 623695-62391 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 623962-624589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 623962-624589 bp Feature: domain Description: GIIM Note: maturase Location: 624640-624868 bp Feature: domain Description: GIIM Note: maturase Location: 624640-624868 bp Feature: gene Location: 625379-625651 bp Feature: gene Location: 625899-626945 bp Ori: QIL88805.1 Feature: domain Description: Zn_Tnp_IS91 Location: 625917-626190 bp Feature: domain Description: Zn_Tnp_IS91 Location: 62591 7-6261 90 bp Feature: domain Description: Y2_Tnp Location: 626316-626796 bp Feature: domain Description: Y2_Tnp Location: 62631 6-626796 bp Feature: gene Location: 952689-953738 bp Ori: QIL89066.1 Feature: domain Description: NPD_like Location: 952716-953667 bp Feature: domain Description: NPD_like Location: 95271 6-953667 bp Feature: gene Location: 953803-954069 bp Feature: domain Description: COG3865 Location: 953806-954049 bp Feature: domain Description: COG3865 Location: 953806-954049 bp Feature: gene Location: 954668-955960 bp Ori: QIL89067.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 954953-955604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 954953-955604 bp Feature: gene Location: 956042-956260 bp Feature: domain Description: COG3865 Location: 956057-956255 bp Feature: domain Description: COG3865 Location: 956057-956255 bp Feature: gene Location: 956489-956932 bp Ori: QIL89068.1 Gene: trxC Feature: domain Description: PRK10996 Location: 956516-956927 bp Feature: domain Description: PRK1 0996 Location: 95651 6-956927 bp Feature: gene Location: 1718668-1719051 bp Feature: gene Location: 1719185-1719676 bp Ori: QIL89609.1 Feature: domain Description: DUF695 Location: 1719266-1719641 bp Feature: domain Description: DUF695 Location: 1 71 9266-1 71 9641 bp Feature: gene Location: 1721063-1722607 bp Ori: QIL89610.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1721174-1721396 bp Feature: domain Description: RVT_N Location: 1 721 1 74-1 721 396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1721441-1722068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 721 441 -1 722068 bp Feature: domain Description: GIIM Note: maturase Location: 1722119-1722347 bp Feature: domain Description: GIIM Note: maturase Location: 1 7221 1 9-1 722347 bp Feature: gene Location: 1723346-1723957 bp Ori: QIL89611.1 Feature: domain Description: CzcD Location: 1723376-1723928 bp Feature: domain Description: CzcD Location: 1 723376-1 723928 bp Feature: gene Location: 1724399-1728328 bp Ori: QIL91854.1 Gene: purL Feature: domain Description: PRK05297 Location: 1724453-1728323 bp Feature: domain Description: PRK05297 Location: 1 724453-1 728323 bp Feature: gene Location: 1794320-1795084 bp Ori: QIL89663.1 Feature: domain Description: PRK07478 Location: 1794323-1795079 bp Feature: domain Description: PRK07478 Location: 1 794323-1 795079 bp Feature: gene Location: 1795452-1795853 bp Ori: QIL89664.1 Feature: domain Description: VOC_like Location: 1795476-1795839 bp Feature: domain Description: VOC_like Location: 1 795476-1 795839 bp Feature: gene Location: 1796658-1797950 bp Ori: QIL89665.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1796943-1797594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 796943-1 797594 bp Feature: gene Location: 1798581-1799234 bp Ori: QIL89666.1 Feature: domain Description: DUF4304 Location: 1798629-1798836 bp Feature: domain Description: DUF4304 Location: 1 798629-1 798836 bp Feature: gene Location: 1800679-1801224 bp Ori: QIL89667.1 Feature: domain Description: PIN7 Location: 1800694-1800988 bp Feature: domain Description: PIN7 Location: 1 800694-1 800988 bp Feature: gene Location: 3093134-3093594 bp Feature: gene Location: 3093975-3095167 bp Feature: domain Description: InsE Location: 3093978-3094155 bp Feature: domain Description: InsE Location: 3093978-30941 55 bp Feature: gene Location: 3095686-3096978 bp Ori: QIL90503.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3095971-3096622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3095971 -3096622 bp Feature: gene Location: 3097626-3098003 bp Feature: gene Location: 3098959-3099858 bp Ori: QIL90505.1 Feature: domain Description: Phage_int_SAM_4 Location: 3098995-3099235 bp Feature: domain Description: Phage_int_SAM_4 Location: 3098995-3099235 bp Feature: domain Description: INT_IntI_C Location: 3099274-3099781 bp Feature: domain Description: INT_IntI_C Location: 3099274-3099781 bp Feature: gene Location: 4285163-4286029 bp Feature: gene Location: 4286071-4286973 bp Feature: gene Location: 4287672-4289216 bp Ori: QIL91391.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4287783-4288005 bp Feature: domain Description: RVT_N Location: 4287783-4288005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4288050-4288677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4288050-4288677 bp Feature: domain Description: GIIM Note: maturase Location: 4288728-4288956 bp Feature: domain Description: GIIM Note: maturase Location: 4288728-4288956 bp Feature: gene Location: 4289371-4290405 bp Ori: QIL91392.1 Feature: domain Description: DUF2806 Location: 4289674-4290283 bp Feature: domain Description: DUF2806 Location: 4289674-4290283 bp Feature: gene Location: 4290535-4291146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Acetyltransf_10 (pfam13673), DUF5063 (pfam16702), NPD_like (cd04730)
COG3865 (Glyoxalase superfamily enzyme, possibly 3-demethylubiquinone-9 3-methyltransferase ), PRK10996 (thioredoxin 2; Provisional), DUF695 (pfam05117), CzcD (COG1230), PRK05297 (phosphoribosylformylglycinamidine synthase; Provisional), PRK07478 (short chain dehydrogenase; Provisional), VOC_like (cd16355), DUF4304 (pfam14137), PIN7 (pfam18475), InsE (COG2963)
DUF2806 (pfam10987)