myRT

myRT report for GCA_011330935.1_ASM1133093v1

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Seq: CP049077.1 Escherichia coli strain p11A chromosome, complete genome (5294134 bp)
Overview 1 RT 1: 2262952-2266923 bp 2 RT 2: 2957407-2964262 bp Neighborhood of RT #1 [2262952, 2266923] Macro_Appr_pase Caudo_TAP RVT-UG17 SLATT_5 Neighborhood of RT #2 [2957407, 2964270] RVT-Retrons PRK11388 Feature: gene Location: 2262952-2263854 bp Ori: QIL94082.1 Feature: domain Description: Macro_Appr_pase Location: 2262970-2263483 bp Feature: domain Description: Macro_Appr_pase Location: 2262970-2263483 bp Feature: gene Location: 2263863-2264447 bp Ori: QIL94083.1 Feature: domain Description: Caudo_TAP Location: 2264079-2264436 bp Feature: domain Description: Caudo_TAP Location: 2264079-2264436 bp Feature: gene Location: 2264560-2265930 bp Ori: QIL94084.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2264788-2265394 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 2264788-2265394 bp Feature: gene Location: 2265908-2266459 bp Ori: QIL94085.1 Feature: domain Description: SLATT_5 Location: 2265917-2266430 bp Feature: domain Description: SLATT_5 Location: 226591 7-2266430 bp Feature: gene Location: 2266704-2266923 bp Feature: gene Location: 2957407-2957922 bp Feature: gene Location: 2957919-2959046 bp Feature: gene Location: 2959293-2961050 bp Ori: QIL94719.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2959437-2960055 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2959437-2960055 bp Feature: gene Location: 2962075-2962305 bp Feature: gene Location: 2962342-2964270 bp Ori: QIL94721.1 Gene: dhaR Feature: domain Description: PRK11388 Location: 2962354-2964262 bp Feature: domain Description: PRK1 1 388 Location: 2962354-2964262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Macro_Appr_pase (cd02900), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160), RVT-Retrons, PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional)

Seq: CP049079.1 Escherichia coli strain p11A plasmid p11A_p2, complete sequence (180963 bp)
Overview 1 RT 1: 12484-16840 bp 2 RT 2: 142425-146811 bp Neighborhood of RT #1 [12484, 16845] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Neighborhood of RT #2 [142425, 146811] autotrans_barl PHA02517 RVT-GII GIIM InsE Feature: gene Location: 12484-12702 bp Feature: gene Location: 12923-13110 bp Feature: gene Location: 13996-15897 bp Ori: QIL97094.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14263-15094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 63-15094 bp Feature: domain Description: Intron_maturas2 Location: 15208-15466 bp Feature: domain Description: Intron_maturas2 Location: 152 08-15466 bp Feature: domain Description: HNHc Note: nucleases Location: 15640-15802 bp Feature: domain Description: HNHc Note: nucleases Location: 15640-15802 bp Feature: gene Location: 16047-16544 bp Ori: QIL97232.1 Gene: ssb Feature: domain Description: PRK13732 Location: 16050-16542 bp Feature: domain Description: PRK13732 Location: 16050-16542 bp Feature: gene Location: 16612-16845 bp Ori: QIL97095.1 Feature: domain Description: DUF905 Location: 16642-16840 bp Feature: domain Description: DUF905 Location: 16642 -16840 bp Feature: gene Location: 142425-142994 bp Ori: QIL97198.1 Feature: domain Description: autotrans_barl Location: 142506-142941 bp Feature: domain Description: autotrans_barl Location: 142 506-142 941 bp Feature: gene Location: 142997-143470 bp Feature: domain Description: PHA02517 Location: 143003-143468 bp Feature: domain Description: PHA02 517 Location: 143003-143468 bp Feature: gene Location: 143560-145068 bp Ori: QIL97250.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143818-144550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143818-144550 bp Feature: domain Description: GIIM Note: maturase Location: 144625-144823 bp Feature: domain Description: GIIM Note: maturase Location: 14462 5-14482 3 bp Feature: gene Location: 145741-146480 bp Feature: domain Description: InsE Location: 145744-146080 bp Feature: domain Description: InsE Location: 145744-146080 bp Feature: gene Location: 146506-146811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), InsE (COG2963)