myRT

myRT report for GCA_011398925.1_ASM1139892v1

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Seq: AP022842.1 Bacillus sp. KH172YL63 DNA, complete genome (4251700 bp)
Overview 1 RT 1: 96028-99296 bp 2 RT 2: 1271085-1276232 bp 3 RT 3: 1876321-1881150 bp 4 RT 4: 2594984-2601400 bp 5 RT 5: 2692974-2696868 bp 6 RT 6: 3506278-3512500 bp 7 RT 7: 3667683-3675136 bp 8 RT 8: 3758190-3763660 bp Neighborhood of RT #1 [96028, 99364] HTH_XRE lysS RVT-GII Neighborhood of RT #2 [1271085, 1276237] TRAP_fused RVT-GII CspC Neighborhood of RT #3 [1876321, 1881167] RVT-GII RVT-GII GIIM DppA DppB Neighborhood of RT #4 [2594984, 2601468] recU MrcB RVT-GII GIIM nth Neighborhood of RT #5 [2692974, 2696870] SporV_AA RVT-GII PRK05572 PRK03660 Neighborhood of RT #6 [3506278, 3512500] ALDH_ACDHII-AcoD MEDS RVT-GII PRK08059 Neighborhood of RT #7 [3667683, 3675147] RNase_R YvaK RVT-GII GIIM secG eno Neighborhood of RT #8 [3758190, 3763665] RVT-GII CwlO1 Peptidase_M23 FtsX Feature: gene Location: 96028-96252 bp Ori: BCB01952.1 Feature: domain Description: HTH_XRE Location: 96049-96220 bp Feature: domain Description: HTH_XRE Location: 96049-96220 bp Feature: gene Location: 96563-98050 bp Ori: BCB01953.1 Gene: lysS Feature: domain Description: lysS Location: 96578-98045 bp Feature: domain Description: lysS Location: 96578-98045 bp Feature: gene Location: 98654-99364 bp Ori: BCB01954.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98852-99296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98852-99296 bp Feature: gene Location: 1271085-1273070 bp Ori: BCB03081.1 Feature: domain Description: TRAP_fused Location: 1271196-1273038 bp Feature: domain Description: TRAP_fused Location: 1 271 1 96-1 273038 bp Feature: gene Location: 1273113-1273337 bp Feature: gene Location: 1274158-1274868 bp Ori: BCB03083.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274356-1274800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 274356-1 274800 bp Feature: gene Location: 1275549-1275722 bp Feature: gene Location: 1276037-1276237 bp Ori: BCB03085.1 Feature: domain Description: CspC Location: 1276040-1276232 bp Feature: domain Description: CspC Location: 1 276040-1 276232 bp Feature: gene Location: 1876321-1876506 bp Feature: gene Location: 1877033-1877212 bp Feature: gene Location: 1877819-1878229 bp Ori: BCB03697.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1878017-1878206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 87801 7-1 878206 bp Feature: gene Location: 1878250-1879053 bp Ori: BCB03698.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1878253-1878634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 878253-1 878634 bp Feature: domain Description: GIIM Note: maturase Location: 1878682-1878889 bp Feature: domain Description: GIIM Note: maturase Location: 1 878682-1 878889 bp Feature: gene Location: 1879396-1880220 bp Ori: BCB03699.1 Gene: dppA Feature: domain Description: DppA Location: 1879399-1880218 bp Feature: domain Description: DppA Location: 1 879399-1 88021 8 bp Feature: gene Location: 1880268-1881167 bp Ori: BCB03700.1 Gene: dppB Feature: domain Description: DppB Location: 1880271-1881150 bp Feature: domain Description: DppB Location: 1 880271 -1 881 1 50 bp Feature: gene Location: 2594984-2595592 bp Ori: BCB04493.1 Gene: recU Feature: domain Description: recU Location: 2594993-2595587 bp Feature: domain Description: recU Location: 2594993-2595587 bp Feature: gene Location: 2595697-2598387 bp Ori: BCB04494.1 Gene: ponA Feature: domain Description: MrcB Location: 2595742-2598130 bp Feature: domain Description: MrcB Location: 2595742-25981 30 bp Feature: gene Location: 2598489-2599724 bp Ori: BCB04495.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2598687-2599305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2598687-2599305 bp Feature: domain Description: GIIM Note: maturase Location: 2599353-2599560 bp Feature: domain Description: GIIM Note: maturase Location: 2599353-2599560 bp Feature: gene Location: 2600312-2600815 bp Feature: gene Location: 2600812-2601468 bp Ori: BCB04497.1 Gene: nth Feature: domain Description: nth Location: 2600827-2601400 bp Feature: domain Description: nth Location: 2600827-2601 400 bp Feature: gene Location: 2692974-2693594 bp Ori: BCB04597.1 Gene: spoVAA Feature: domain Description: SporV_AA Location: 2692986-2693238 bp Feature: domain Description: SporV_AA Location: 2692986-2693238 bp Feature: gene Location: 2693823-2694020 bp Feature: gene Location: 2694347-2695057 bp Ori: BCB04599.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2694545-2694986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2694545-2694986 bp Feature: gene Location: 2695650-2696414 bp Ori: BCB04600.1 Gene: sigF Feature: domain Description: PRK05572 Location: 2695653-2696403 bp Feature: domain Description: PRK05572 Location: 2695653-2696403 bp Feature: gene Location: 2696427-2696870 bp Ori: BCB04601.1 Gene: spoIIAB Feature: domain Description: PRK03660 Location: 2696433-2696868 bp Feature: domain Description: PRK03660 Location: 2696433-2696868 bp Feature: gene Location: 3506278-3507798 bp Ori: BCB05421.1 Feature: domain Description: ALDH_ACDHII-AcoD Location: 3506335-3507772 bp Feature: domain Description: ALDH_ACDHII-AcoD Location: 3506335-3507772 bp Feature: gene Location: 3508078-3508632 bp Ori: BCB05422.1 Feature: domain Description: MEDS Location: 3508123-3508570 bp Feature: domain Description: MEDS Location: 35081 23-3508570 bp Feature: gene Location: 3509341-3510051 bp Ori: BCB05423.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3509539-3509980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3509539-3509980 bp Feature: gene Location: 3510654-3511061 bp Ori: BCB05424.1 Gene: yugI Feature: domain Description: PRK08059 Location: 3510657-3511053 bp Feature: domain Description: PRK08059 Location: 351 0657-351 1 053 bp Feature: gene Location: 3511256-3512500 bp Feature: gene Location: 3667683-3670022 bp Ori: BCB05594.1 Gene: vacB Feature: domain Description: RNase_R Location: 3667716-3669813 bp Feature: domain Description: RNase_R Location: 366771 6-366981 3 bp Feature: gene Location: 3670050-3670796 bp Ori: BCB05595.1 Gene: est Feature: domain Description: YvaK Location: 3670053-3670779 bp Feature: domain Description: YvaK Location: 3670053-3670779 bp Feature: gene Location: 3671536-3672798 bp Ori: BCB05596.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3671734-3672352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3671 734-3672352 bp Feature: domain Description: GIIM Note: maturase Location: 3672400-3672607 bp Feature: domain Description: GIIM Note: maturase Location: 3672400-3672607 bp Feature: gene Location: 3673393-3673620 bp Ori: BCB05597.1 Gene: secG Feature: domain Description: secG Location: 3673396-3673612 bp Feature: domain Description: secG Location: 3673396-367361 2 bp Feature: gene Location: 3673855-3675147 bp Ori: BCB05598.1 Gene: eno Feature: domain Description: eno Location: 3673867-3675136 bp Feature: domain Description: eno Location: 3673867-36751 36 bp Feature: gene Location: 3758190-3758750 bp Feature: gene Location: 3758936-3759172 bp Feature: gene Location: 3760102-3760812 bp Ori: BCB05677.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3760300-3760744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3760300-3760744 bp Feature: gene Location: 3761404-3762741 bp Ori: BCB05678.1 Feature: domain Description: CwlO1 Location: 3761413-3762289 bp Feature: domain Description: CwlO1 Location: 3761 41 3-3762289 bp Feature: domain Description: Peptidase_M23 Location: 3762409-3762718 bp Feature: domain Description: Peptidase_M23 Location: 3762409-376271 8 bp Feature: gene Location: 3762781-3763665 bp Ori: BCB05679.1 Gene: ftsX Feature: domain Description: FtsX Location: 3762790-3763660 bp Feature: domain Description: FtsX Location: 3762790-3763660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), lysS (PRK02983), RVT-GII, TRAP_fused (TIGR02123), CspC (COG1278), GIIM (pfam08388), DppA (COG2362), DppB (COG0601), recU (TIGR00648), MrcB (COG0744)
nth (TIGR01083), SporV_AA (pfam12164), PRK05572 (RNA polymerase sporulation sigma factor, SigF/SigG family), PRK03660 (anti-sigma F factor; Provisional), ALDH_ACDHII-AcoD (cd07116), MEDS (pfam14417), PRK08059 (general stress protein 13; Validated), RNase_R (TIGR02063), YvaK (COG1647), secG (TIGR00810)
eno (TIGR01060), CwlO1 (COG3883), Peptidase_M23 (pfam01551), FtsX (pfam02687)