myRT

myRT report for GCA_011399095.1_ASM1139909v1

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Seq: AP022843.1 Halomonas hydrothermalis Slthf2 DNA, complete genome (4120823 bp)
Overview 1 RT 1: 886280-894640 bp 2 RT 2: 1197165-1203355 bp 3 RT 3: 1394008-1399248 bp 4 RT 4: 1920618-1926088 bp 5 RT 5: 2979917-2986263 bp 6 RT 6: 3041531-3047767 bp 7 RT 7: 3109012-3115126 bp 8 RT 8: 3422312-3428715 bp Neighborhood of RT #1 [886280, 894657] YqaE CirA RVT-GII RVT-GII GIIM PQQ_membr_DH PGDH Neighborhood of RT #2 [1197165, 1203378] Arm-DNA-bind_3 INT_P4_C RVT-GII GIIM PRK07478 LPD1 Neighborhood of RT #3 [1394008, 1399250] PhnA RVT-GII GIIM suf_reg_Xantho PRK11814 Neighborhood of RT #4 [1920618, 1926093] HTH_Tnp_1 HTH_Tnp_1 HTH_29 Tra5 RVT-GII GIIM mycofact_OYE_2 mycofact_OYE_2 Neighborhood of RT #5 [2979917, 2986263] InsQ RVT-GII GIIM RVT-GII PRK10044 Neighborhood of RT #6 [3041531, 3047790] PRK09146 COG2905 RVT-GII GIIM DUF4168 RhaT Neighborhood of RT #7 [3109012, 3115158] YgiN HAD_L2-DEX RVT-GII GIIM PRK07482 ALDH_F5_SSADH_GabD Neighborhood of RT #8 [3422312, 3428717] PRK05479 PRK11716 RVT-GII GIIM ilvH PRK06466 Feature: gene Location: 886280-886453 bp Ori: BCB06949.1 Feature: domain Description: YqaE Location: 886295-886451 bp Feature: domain Description: YqaE Location: 886295-886451 bp Feature: gene Location: 886856-888904 bp Ori: BCB06950.1 Feature: domain Description: CirA Location: 886895-888902 bp Feature: domain Description: CirA Location: 886895-888902 bp Feature: gene Location: 889429-890220 bp Ori: BCB06951.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 889753-890134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 889753-8901 34 bp Feature: gene Location: 890126-890743 bp Ori: BCB06952.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 890135-890369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8901 35-890369 bp Feature: domain Description: GIIM Note: maturase Location: 890417-890639 bp Feature: domain Description: GIIM Note: maturase Location: 89041 7-890639 bp Feature: gene Location: 890907-893387 bp Ori: BCB06953.1 Gene: gcd Feature: domain Description: PQQ_membr_DH Location: 891006-893382 bp Feature: domain Description: PQQ_membr_DH Location: 891 006-893382 bp Feature: gene Location: 893653-894657 bp Ori: BCB06954.1 Feature: domain Description: PGDH Location: 893665-894640 bp Feature: domain Description: PGDH Location: 893665-894640 bp Feature: gene Location: 1197165-1197716 bp Feature: gene Location: 1197820-1199001 bp Ori: BCB07244.1 Feature: domain Description: Arm-DNA-bind_3 Location: 1197850-1198078 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 1 97850-1 1 98078 bp Feature: domain Description: INT_P4_C Location: 1198459-1198996 bp Feature: domain Description: INT_P4_C Location: 1 1 98459-1 1 98996 bp Feature: gene Location: 1199685-1201016 bp Ori: BCB07245.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1200009-1200624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 200009-1 200624 bp Feature: domain Description: GIIM Note: maturase Location: 1200675-1200897 bp Feature: domain Description: GIIM Note: maturase Location: 1 200675-1 200897 bp Feature: gene Location: 1201442-1202104 bp Ori: BCB07246.1 Feature: domain Description: PRK07478 Location: 1201445-1202102 bp Feature: domain Description: PRK07478 Location: 1 201 445-1 2021 02 bp Feature: gene Location: 1202593-1203378 bp Ori: BCB07247.1 Feature: domain Description: LPD1 Location: 1203142-1203355 bp Feature: domain Description: LPD1 Location: 1 2031 42-1 203355 bp Feature: gene Location: 1394008-1394568 bp Feature: gene Location: 1394718-1395059 bp Ori: BCB07424.1 Feature: domain Description: PhnA Location: 1394727-1395057 bp Feature: domain Description: PhnA Location: 1 394727-1 395057 bp Feature: gene Location: 1395636-1396952 bp Ori: BCB07425.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1395960-1396578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 395960-1 396578 bp Feature: domain Description: GIIM Note: maturase Location: 1396626-1396845 bp Feature: domain Description: GIIM Note: maturase Location: 1 396626-1 396845 bp Feature: gene Location: 1397278-1397736 bp Ori: BCB07426.1 Feature: domain Description: suf_reg_Xantho Location: 1397281-1397665 bp Feature: domain Description: suf_reg_Xantho Location: 1 397281 -1 397665 bp Feature: gene Location: 1397808-1399250 bp Ori: BCB07427.1 Gene: ycf24 Feature: domain Description: PRK11814 Location: 1397817-1399248 bp Feature: domain Description: PRK1 1 81 4 Location: 1 39781 7-1 399248 bp Feature: gene Location: 1920618-1921127 bp Ori: BCB07913.1 Feature: domain Description: HTH_Tnp_1 Location: 1920633-1920789 bp Feature: domain Description: HTH_Tnp_1 Location: 1 920633-1 920789 bp Feature: domain Description: HTH_Tnp_1 Location: 1920801-1921029 bp Feature: domain Description: HTH_Tnp_1 Location: 1 920801 -1 921 029 bp Feature: gene Location: 1921154-1922185 bp Ori: BCB07914.1 Gene: tnpA Feature: domain Description: HTH_29 Location: 1921187-1921331 bp Feature: domain Description: HTH_29 Location: 1 921 1 87-1 921 331 bp Feature: domain Description: Tra5 Location: 1921439-1922027 bp Feature: domain Description: Tra5 Location: 1 921 439-1 922027 bp Feature: gene Location: 1922768-1923661 bp Ori: BCB07915.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1922774-1923299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 922774-1 923299 bp Feature: domain Description: GIIM Note: maturase Location: 1923350-1923569 bp Feature: domain Description: GIIM Note: maturase Location: 1 923350-1 923569 bp Feature: gene Location: 1923726-1923899 bp Feature: gene Location: 1924126-1926093 bp Ori: BCB07917.1 Gene: stcD Feature: domain Description: mycofact_OYE_2 Location: 1924135-1925926 bp Feature: domain Description: mycofact_OYE_2 Location: 1 9241 35-1 925926 bp Feature: domain Description: mycofact_OYE_2 Location: 1926007-1926088 bp Feature: domain Description: mycofact_OYE_2 Location: 1 926007-1 926088 bp Feature: gene Location: 2979917-2981098 bp Ori: BCB08858.1 Feature: domain Description: InsQ Location: 2979935-2981048 bp Feature: domain Description: InsQ Location: 2979935-2981 048 bp Feature: gene Location: 2981095-2981352 bp Feature: gene Location: 2981533-2982222 bp Ori: BCB08860.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2981542-2981776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2981 542-2981 776 bp Feature: domain Description: GIIM Note: maturase Location: 2981824-2982043 bp Feature: domain Description: GIIM Note: maturase Location: 2981 824-2982043 bp Feature: gene Location: 2982128-2982919 bp Ori: BCB08861.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2982452-2982833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2982452-2982833 bp Feature: gene Location: 2983455-2985536 bp Ori: BCB08862.1 Feature: domain Description: PRK10044 Location: 2983608-2985528 bp Feature: domain Description: PRK1 0044 Location: 2983608-2985528 bp Feature: gene Location: 2985940-2986263 bp Feature: gene Location: 3041531-3042256 bp Ori: BCB08908.1 Feature: domain Description: PRK09146 Location: 3041564-3042254 bp Feature: domain Description: PRK091 46 Location: 3041 564-3042254 bp Feature: gene Location: 3042258-3044168 bp Ori: BCB08909.1 Feature: domain Description: COG2905 Location: 3042270-3044142 bp Feature: domain Description: COG2905 Location: 3042270-30441 42 bp Feature: gene Location: 3044409-3045725 bp Ori: BCB08910.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3044733-3045351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3044733-3045351 bp Feature: domain Description: GIIM Note: maturase Location: 3045399-3045618 bp Feature: domain Description: GIIM Note: maturase Location: 3045399-304561 8 bp Feature: gene Location: 3046320-3046709 bp Ori: BCB08911.1 Feature: domain Description: DUF4168 Location: 3046458-3046686 bp Feature: domain Description: DUF41 68 Location: 3046458-3046686 bp Feature: gene Location: 3046891-3047790 bp Ori: BCB08912.1 Feature: domain Description: RhaT Location: 3046918-3047767 bp Feature: domain Description: RhaT Location: 304691 8-3047767 bp Feature: gene Location: 3109012-3109359 bp Ori: BCB08985.1 Feature: domain Description: YgiN Location: 3109030-3109270 bp Feature: domain Description: YgiN Location: 31 09030-31 09270 bp Feature: gene Location: 3109421-3110098 bp Ori: BCB08986.1 Gene: dehII Feature: domain Description: HAD_L2-DEX Location: 3109433-3110084 bp Feature: domain Description: HAD_L2-DEX Location: 31 09433-31 1 0084 bp Feature: gene Location: 3110320-3111636 bp Ori: BCB08987.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3110644-3111262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 0644-31 1 1 262 bp Feature: domain Description: GIIM Note: maturase Location: 3111310-3111529 bp Feature: domain Description: GIIM Note: maturase Location: 31 1 1 31 0-31 1 1 529 bp Feature: gene Location: 3112159-3113592 bp Ori: BCB08988.1 Feature: domain Description: PRK07482 Location: 3112171-3113542 bp Feature: domain Description: PRK07482 Location: 31 1 21 71 -31 1 3542 bp Feature: gene Location: 3113662-3115158 bp Ori: BCB08989.1 Gene: gabD_1 Feature: domain Description: ALDH_F5_SSADH_GabD Location: 3113779-3115126 bp Feature: domain Description: ALDH_F5_SSADH_GabD Location: 31 1 3779-31 1 51 26 bp Feature: gene Location: 3422312-3423328 bp Ori: BCB09244.1 Gene: ilvC Feature: domain Description: PRK05479 Location: 3422315-3423296 bp Feature: domain Description: PRK05479 Location: 342231 5-3423296 bp Feature: gene Location: 3423527-3424414 bp Ori: BCB09245.1 Gene: ilvY Feature: domain Description: PRK11716 Location: 3423602-3424403 bp Feature: domain Description: PRK1 1 71 6 Location: 3423602-3424403 bp Feature: gene Location: 3424502-3425890 bp Ori: BCB09246.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3424826-3425441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3424826-3425441 bp Feature: domain Description: GIIM Note: maturase Location: 3425492-3425714 bp Feature: domain Description: GIIM Note: maturase Location: 3425492-342571 4 bp Feature: gene Location: 3426418-3426909 bp Ori: BCB09247.1 Gene: ilvH Feature: domain Description: ilvH Location: 3426421-3426898 bp Feature: domain Description: ilvH Location: 3426421 -3426898 bp Feature: gene Location: 3426909-3428717 bp Ori: BCB09248.1 Gene: ilvI Feature: domain Description: PRK06466 Location: 3426996-3428715 bp Feature: domain Description: PRK06466 Location: 3426996-342871 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YqaE (COG0401), CirA (COG1629), RVT-GII, GIIM (pfam08388), PQQ_membr_DH (TIGR03074), PGDH (TIGR01327), Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), PRK07478 (short chain dehydrogenase; Provisional), LPD1 (pfam18796)
PhnA (pfam03831), suf_reg_Xantho (TIGR02944), PRK11814 (cysteine desulfurase activator complex subunit SufB; Provisional), HTH_Tnp_1 (pfam01527), HTH_29 (pfam13551), Tra5 (COG2801), mycofact_OYE_2 (TIGR03997), InsQ (COG0675), PRK10044 (ferrichrome outer membrane transporter; Provisional), PRK09146 (DNA polymerase III subunit epsilon; Validated)
COG2905 (Signal-transduction protein containing cAMP-binding, CBS, and nucleotidyltransferase domains ), DUF4168 (pfam13767), RhaT (TIGR00776), YgiN (COG1359), HAD_L2-DEX (cd02588), PRK07482 (hypothetical protein; Provisional), ALDH_F5_SSADH_GabD (cd07103), PRK05479 (ketol-acid reductoisomerase; Provisional), PRK11716 (HTH-type transcriptional activator IlvY), ilvH (PRK11895)
PRK06466 (acetolactate synthase 3 large subunit)