myRT

myRT report for GCA_011404955.1_ASM1140495v1

Download annotations/find similar RTs

Seq: AP022323.1 Aeribacillus pallidus PI8 DNA, complete genome (3833114 bp)
Overview 1 RT 1: 614708-620543 bp 2 RT 2: 754703-757829 bp 3 RT 3: 1362241-1367192 bp 4 RT 4: 1389316-1395036 bp 5 RT 5: 1404540-1412500 bp 6 RT 6: 2127351-2135482 bp Neighborhood of RT #1 [614708, 620632] PRK01712 PRK12804 PRK12804 RVT-GII GIIM COG2604 Neighborhood of RT #2 [754703, 757831] DinB_2 COG3435 RVT-GII GIIM PRK07738 Neighborhood of RT #3 [1362241, 1367194] Peptidase_M19 Hydrolase_4 KOG1454 RVT-GII GIIM YozB Usp Neighborhood of RT #4 [1389316, 1395632] HTH_MerR-like_sg4 TlyC RVT-GII GIIM Tar DUF948 DDE_5 Neighborhood of RT #5 [1404540, 1412535] PRK09034 Tar RVT-GII GIIM MarR PRK11359 Neighborhood of RT #6 [2127351, 2135547] mutL mutS1 RVT-GII GIIM CotE YmcA Feature: gene Location: 614708-614938 bp Ori: BBU38284.1 Gene: csrA Feature: domain Description: PRK01712 Location: 614714-614885 bp Feature: domain Description: PRK01 71 2 Location: 61 471 4-61 4885 bp Feature: gene Location: 615147-615971 bp Ori: BBU38285.1 Feature: domain Description: PRK12804 Location: 615150-615672 bp Feature: domain Description: PRK1 2804 Location: 61 51 50-61 5672 bp Feature: domain Description: PRK12804 Location: 615684-615969 bp Feature: domain Description: PRK1 2804 Location: 61 5684-61 5969 bp Feature: gene Location: 616526-617827 bp Ori: BBU38286.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 616766-617384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 6766-61 7384 bp Feature: domain Description: GIIM Note: maturase Location: 617432-617648 bp Feature: domain Description: GIIM Note: maturase Location: 61 7432-61 7648 bp Feature: gene Location: 618190-618768 bp Feature: gene Location: 618758-620632 bp Ori: BBU38288.1 Feature: domain Description: COG2604 Location: 618797-620543 bp Feature: domain Description: COG2604 Location: 61 8797-620543 bp Feature: gene Location: 754703-755182 bp Ori: BBU38401.1 Feature: domain Description: DinB_2 Location: 754739-755159 bp Feature: domain Description: DinB_2 Location: 754739-7551 59 bp Feature: gene Location: 755207-756319 bp Ori: BBU38402.1 Feature: domain Description: COG3435 Location: 755231-756272 bp Feature: domain Description: COG3435 Location: 755231 -756272 bp Feature: gene Location: 756590-756832 bp Ori: BBU38403.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756593-756755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756593-756755 bp Feature: gene Location: 756896-757123 bp Ori: BBU38404.1 Feature: domain Description: GIIM Note: maturase Location: 756902-757070 bp Feature: domain Description: GIIM Note: maturase Location: 756902-757070 bp Feature: gene Location: 757487-757831 bp Ori: BBU38405.1 Gene: yvyC Feature: domain Description: PRK07738 Location: 757535-757829 bp Feature: domain Description: PRK07738 Location: 757535-757829 bp Feature: gene Location: 1362241-1363167 bp Ori: BBU38996.1 Feature: domain Description: Peptidase_M19 Location: 1362247-1363162 bp Feature: domain Description: Peptidase_M1 9 Location: 1 362247-1 3631 62 bp Feature: gene Location: 1363292-1364104 bp Ori: BBU38997.1 Feature: domain Description: Hydrolase_4 Location: 1363385-1363712 bp Feature: domain Description: Hydrolase_4 Location: 1 363385-1 36371 2 bp Feature: domain Description: KOG1454 Location: 1363805-1364000 bp Feature: domain Description: KOG1 454 Location: 1 363805-1 364000 bp Feature: gene Location: 1364675-1365976 bp Ori: BBU38998.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1364915-1365533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36491 5-1 365533 bp Feature: domain Description: GIIM Note: maturase Location: 1365581-1365794 bp Feature: domain Description: GIIM Note: maturase Location: 1 365581 -1 365794 bp Feature: gene Location: 1366050-1366607 bp Ori: BBU38999.1 Feature: domain Description: YozB Location: 1366086-1366605 bp Feature: domain Description: YozB Location: 1 366086-1 366605 bp Feature: gene Location: 1366778-1367194 bp Ori: BBU39000.1 Feature: domain Description: Usp Location: 1366781-1367192 bp Feature: domain Description: Usp Location: 1 366781 -1 3671 92 bp Feature: gene Location: 1389316-1389648 bp Ori: BBU39024.1 Feature: domain Description: HTH_MerR-like_sg4 Location: 1389319-1389637 bp Feature: domain Description: HTH_MerR-like_sg4 Location: 1 38931 9-1 389637 bp Feature: gene Location: 1389735-1391030 bp Ori: BBU39025.1 Feature: domain Description: TlyC Location: 1389744-1391022 bp Feature: domain Description: TlyC Location: 1 389744-1 391 022 bp Feature: gene Location: 1391929-1393230 bp Ori: BBU39026.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1392169-1392787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3921 69-1 392787 bp Feature: domain Description: GIIM Note: maturase Location: 1392835-1393048 bp Feature: domain Description: GIIM Note: maturase Location: 1 392835-1 393048 bp Feature: gene Location: 1393324-1394175 bp Ori: BBU39027.1 Feature: domain Description: Tar Location: 1393576-1393771 bp Feature: domain Description: Tar Location: 1 393576-1 393771 bp Feature: domain Description: DUF948 Location: 1393912-1394116 bp Feature: domain Description: DUF948 Location: 1 39391 2-1 3941 1 6 bp Feature: gene Location: 1394271-1395632 bp Ori: BBU39028.1 Feature: domain Description: DDE_5 Location: 1394490-1395036 bp Feature: domain Description: DDE_5 Location: 1 394490-1 395036 bp Feature: gene Location: 1404540-1405895 bp Ori: BBU39034.1 Gene: yclM Feature: domain Description: PRK09034 Location: 1404543-1405887 bp Feature: domain Description: PRK09034 Location: 1 404543-1 405887 bp Feature: gene Location: 1406502-1408229 bp Ori: BBU39035.1 Gene: yvaQ_1 Feature: domain Description: Tar Location: 1406823-1408224 bp Feature: domain Description: Tar Location: 1 406823-1 408224 bp Feature: gene Location: 1408824-1410125 bp Ori: BBU39036.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1409064-1409682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 409064-1 409682 bp Feature: domain Description: GIIM Note: maturase Location: 1409730-1409943 bp Feature: domain Description: GIIM Note: maturase Location: 1 409730-1 409943 bp Feature: gene Location: 1410327-1410788 bp Ori: BBU39037.1 Gene: ykoM Feature: domain Description: MarR Location: 1410366-1410759 bp Feature: domain Description: MarR Location: 1 41 0366-1 41 0759 bp Feature: gene Location: 1410883-1412535 bp Ori: BBU39038.1 Feature: domain Description: PRK11359 Location: 1411216-1412500 bp Feature: domain Description: PRK1 1 359 Location: 1 41 1 21 6-1 41 2500 bp Feature: gene Location: 2127351-2129249 bp Ori: BBU39737.1 Gene: mutL Feature: domain Description: mutL Location: 2127360-2129241 bp Feature: domain Description: mutL Location: 21 27360-21 29241 bp Feature: gene Location: 2129259-2131877 bp Ori: BBU39738.1 Gene: mutS Feature: domain Description: mutS1 Location: 2129271-2131866 bp Feature: domain Description: mutS1 Location: 21 29271 -21 31 866 bp Feature: gene Location: 2132475-2133776 bp Ori: BBU39739.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2132715-2133333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 3271 5-21 33333 bp Feature: domain Description: GIIM Note: maturase Location: 2133381-2133594 bp Feature: domain Description: GIIM Note: maturase Location: 21 33381 -21 33594 bp Feature: gene Location: 2134325-2134879 bp Ori: BBU39740.1 Gene: cotE Feature: domain Description: CotE Location: 2134334-2134862 bp Feature: domain Description: CotE Location: 21 34334-21 34862 bp Feature: gene Location: 2135122-2135547 bp Ori: BBU39741.1 Gene: ymcA Feature: domain Description: YmcA Location: 2135131-2135482 bp Feature: domain Description: YmcA Location: 21 351 31 -21 35482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01712 (carbon storage regulator CsrA), PRK12804 (flagellin; Provisional), RVT-GII, GIIM (pfam08388), COG2604 (Uncharacterized conserved protein ), DinB_2 (pfam12867), COG3435 (Gentisate 1,2-dioxygenase ), PRK07738 (flagellar protein FlaG; Provisional), Peptidase_M19 (pfam01244), Hydrolase_4 (pfam12146)
KOG1454 (KOG1454, Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) ), YozB (COG2322), Usp (pfam00582), HTH_MerR-like_sg4 (cd04779), TlyC (COG1253), Tar (COG0840), DUF948 (pfam06103), DDE_5 (pfam13546), PRK09034 (aspartate kinase; Reviewed), MarR (pfam01047)
PRK11359 (cyclic-di-GMP phosphodiesterase; Provisional), mutL (PRK00095), mutS1 (TIGR01070), CotE (pfam10628), YmcA (COG4550)