myRT

myRT report for GCA_011465255.1_ASM1146525v1

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Seq: CP045306.1 Legionella longbeachae strain B1445CHC chromosome, complete genome (4000621 bp)
Overview 1 RT 1: 28121-36257 bp 2 RT 2: 1602332-1605133 bp 3 RT 3: 2392514-2395814 bp 4 RT 4: 2474379-2478162 bp 5 RT 5: 3743754-3747598 bp 6 RT 6: 3914632-3921576 bp Neighborhood of RT #1 [28121, 36271] YciA COG3666 DDE_Tnp_1 RVT_N RVT-GII PRK11768 DEAH_box_HrpB Neighborhood of RT #2 [1602332, 1605133] Acetyltransf_3 RVT-UG18 Neighborhood of RT #3 [2392514, 2395814] HTH_XRE RVT-Retrons LexA Neighborhood of RT #4 [2474379, 2478209] RVT-UG18 RND_mfp HlyD_3 PRK11556 Neighborhood of RT #5 [3743754, 3748614] DDE_Tnp_1_3 RVT-UG18 SidC_N Neighborhood of RT #6 [3914632, 3921576] PRK10060 RVT-UNC CAP_ED CPBP Feature: gene Location: 28121-28510 bp Ori: QIN30855.1 Feature: domain Description: YciA Location: 28136-28490 bp Feature: domain Description: YciA Location: 281 36-28490 bp Feature: gene Location: 28588-29960 bp Feature: domain Description: COG3666 Location: 28621-29062 bp Feature: domain Description: COG3666 Location: 28621 -29062 bp Feature: domain Description: DDE_Tnp_1 Location: 29203-29428 bp Feature: domain Description: DDE_Tnp_1 Location: 29203-29428 bp Feature: gene Location: 30654-32083 bp Gene: ltrA Feature: domain Description: RVT_N Location: 30705-30948 bp Feature: domain Description: RVT_N Location: 30705-30948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30993-31521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30993-31 521 bp Feature: gene Location: 32429-33409 bp Ori: QIN30856.1 Feature: domain Description: PRK11768 Location: 32441-33398 bp Feature: domain Description: PRK1 1 768 Location: 32441 -33398 bp Feature: gene Location: 33671-36271 bp Ori: QIN30857.1 Gene: hrpB Feature: domain Description: DEAH_box_HrpB Location: 33725-36257 bp Feature: domain Description: DEAH_box_HrpB Location: 33725-36257 bp Feature: gene Location: 1602332-1602508 bp Ori: QIN34036.1 Feature: domain Description: Acetyltransf_3 Location: 1602335-1602464 bp Feature: domain Description: Acetyltransf_3 Location: 1 602335-1 602464 bp Feature: gene Location: 1602509-1603276 bp Feature: gene Location: 1603358-1603789 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 1603580-1603790 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 1 603580-1 603790 bp Feature: gene Location: 1603990-1604229 bp Feature: gene Location: 1604168-1605133 bp Feature: gene Location: 2392514-2392729 bp Feature: gene Location: 2392765-2393073 bp Ori: QIN32733.1 Feature: domain Description: HTH_XRE Location: 2392774-2392942 bp Feature: domain Description: HTH_XRE Location: 2392774-2392942 bp Feature: gene Location: 2393057-2394082 bp Ori: QIN32734.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2393276-2393807 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2393276-2393807 bp Feature: gene Location: 2394090-2394767 bp Ori: QIN32735.1 Feature: domain Description: LexA Location: 2394132-2394759 bp Feature: domain Description: LexA Location: 23941 32-2394759 bp Feature: gene Location: 2394942-2395814 bp Feature: gene Location: 2474379-2475335 bp Feature: gene Location: 2475286-2475564 bp Feature: gene Location: 2475714-2476145 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 2475936-2476146 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 2475936-24761 46 bp Feature: gene Location: 2476645-2476827 bp Feature: gene Location: 2477007-2478209 bp Ori: QIN32811.1 Feature: domain Description: RND_mfp Location: 2477115-2477616 bp Feature: domain Description: RND_mfp Location: 24771 1 5-247761 6 bp Feature: domain Description: HlyD_3 Location: 2477631-2477919 bp Feature: domain Description: HlyD_3 Location: 2477631 -247791 9 bp Feature: domain Description: PRK11556 Location: 2477970-2478162 bp Feature: domain Description: PRK1 1 556 Location: 2477970-24781 62 bp Feature: gene Location: 3743754-3744647 bp Ori: QIN33797.1 Feature: domain Description: DDE_Tnp_1_3 Location: 3744081-3744531 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 3744081 -3744531 bp Feature: gene Location: 3744761-3744886 bp Feature: gene Location: 3745223-3745939 bp Ori: QIN33798.1 Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 3745238-3745820 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 3745238-3745820 bp Feature: gene Location: 3745899-3746273 bp Feature: gene Location: 3746206-3748614 bp Ori: QIN33800.1 Feature: domain Description: SidC_N Location: 3746218-3747598 bp Feature: domain Description: SidC_N Location: 374621 8-3747598 bp Feature: gene Location: 3914632-3916278 bp Ori: QIN33931.1 Feature: domain Description: PRK10060 Location: 3914956-3916249 bp Feature: domain Description: PRK1 0060 Location: 391 4956-391 6249 bp Feature: gene Location: 3916304-3916714 bp Feature: gene Location: 3917031-3918416 bp Ori: QIN33933.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 3917268-3917904 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 391 7268-391 7904 bp Feature: gene Location: 3918391-3919503 bp Ori: QIN33934.1 Feature: domain Description: CAP_ED Location: 3918430-3918730 bp Feature: domain Description: CAP_ED Location: 391 8430-391 8730 bp Feature: domain Description: CPBP Location: 3919210-3919456 bp Feature: domain Description: CPBP Location: 391 921 0-391 9456 bp Feature: gene Location: 3919516-3921576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YciA (COG1607), COG3666 (Transposase ), DDE_Tnp_1 (pfam01609), RVT_N (pfam13655), RVT-GII, PRK11768 (serine/threonine protein kinase), DEAH_box_HrpB (TIGR01970), Acetyltransf_3 (pfam13302), RVT-UG18, HTH_XRE (smart00530)
RVT-Retrons, LexA (COG1974), RND_mfp (TIGR01730), HlyD_3 (pfam13437), PRK11556 (MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit), DDE_Tnp_1_3 (pfam13612), SidC_N (pfam18219), PRK10060 (cyclic di-GMP phosphodiesterase), RVT-DGRs/RVT-UG26/RVT-CRISPR/RVT-UG27(RVT-UNC), CAP_ED (cl00047)
CPBP