myRT

myRT report for GCA_011465395.1_ASM1146539v1

Download annotations/find similar RTs

Seq: CP045308.1 Legionella longbeachae strain B41211CHC chromosome, complete genome (4001094 bp)
Overview 1 RT 1: 28120-36248 bp 2 RT 2: 1281149-1289062 bp 3 RT 3: 1599470-1602269 bp 4 RT 4: 2137736-2143370 bp 5 RT 5: 2149883-2155579 bp 6 RT 6: 2426009-2429792 bp 7 RT 7: 3394972-3409204 bp 8 RT 8: 3913860-3918999 bp Neighborhood of RT #1 [28120, 36262] YciA COG3666 DDE_Tnp_1_3 DDE_Tnp_1_6 RVT_N RVT-GII PRK11768 DEAH_box_HrpB Neighborhood of RT #2 [1281149, 1289085] PRK08961 Toluene_X RVT-GII GIIM ALAD_PBGS Neighborhood of RT #3 [1599470, 1602269] Acetyltransf_3 RVT-UG18 Neighborhood of RT #4 [2137736, 2143375] PRK07533 PRK13169 DDE_Tnp_IS66 RVT-GII GIIM MhpC PRK13516 Neighborhood of RT #5 [2149883, 2155623] SidC_N RVT-UG18 DDE_Tnp_1_3 MS_channel Neighborhood of RT #6 [2426009, 2429839] RVT-UG18 RND_mfp HlyD_3 PRK11556 Neighborhood of RT #7 [3394972, 3409209] Asp_Arg_Hydrox GHD GHD DUF5122 DUF5122 DUF5122 DUF5122 DUF5122 DUF5122 RVT-GII GIIM FN3 Flg_new tauD PRK06138 Neighborhood of RT #8 [3913860, 3919014] PRK10060 RVT-UNC CAP_ED HTH_Tnp_1 Feature: gene Location: 28120-28509 bp Ori: QIN34213.1 Feature: domain Description: YciA Location: 28135-28489 bp Feature: domain Description: YciA Location: 281 35-28489 bp Feature: gene Location: 28587-29951 bp Ori: QIN34214.1 Feature: domain Description: COG3666 Location: 28620-29061 bp Feature: domain Description: COG3666 Location: 28620-29061 bp Feature: domain Description: DDE_Tnp_1_3 Location: 29208-29412 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 29208-2941 2 bp Feature: domain Description: DDE_Tnp_1_6 Location: 29544-29868 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 29544-29868 bp Feature: gene Location: 30645-32074 bp Gene: ltrA Feature: domain Description: RVT_N Location: 30696-30939 bp Feature: domain Description: RVT_N Location: 30696-30939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30984-31512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30984-31 51 2 bp Feature: gene Location: 32420-33400 bp Ori: QIN34215.1 Feature: domain Description: PRK11768 Location: 32432-33389 bp Feature: domain Description: PRK1 1 768 Location: 32432-33389 bp Feature: gene Location: 33662-36262 bp Ori: QIN34216.1 Gene: hrpB Feature: domain Description: DEAH_box_HrpB Location: 33716-36248 bp Feature: domain Description: DEAH_box_HrpB Location: 3371 6-36248 bp Feature: gene Location: 1281149-1283710 bp Ori: QIN35200.1 Feature: domain Description: PRK08961 Location: 1281152-1283708 bp Feature: domain Description: PRK08961 Location: 1 281 1 52-1 283708 bp Feature: gene Location: 1283974-1285440 bp Ori: QIN35201.1 Feature: domain Description: Toluene_X Location: 1284031-1285363 bp Feature: domain Description: Toluene_X Location: 1 284031 -1 285363 bp Feature: gene Location: 1285978-1287312 bp Ori: QIN35202.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1286263-1286950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 286263-1 286950 bp Feature: domain Description: GIIM Note: maturase Location: 1287019-1287238 bp Feature: domain Description: GIIM Note: maturase Location: 1 28701 9-1 287238 bp Feature: gene Location: 1287482-1287871 bp Feature: gene Location: 1288090-1289085 bp Ori: QIN35204.1 Gene: hemB Feature: domain Description: ALAD_PBGS Location: 1288126-1289062 bp Feature: domain Description: ALAD_PBGS Location: 1 2881 26-1 289062 bp Feature: gene Location: 1599470-1599646 bp Ori: QIN37364.1 Feature: domain Description: Acetyltransf_3 Location: 1599473-1599602 bp Feature: domain Description: Acetyltransf_3 Location: 1 599473-1 599602 bp Feature: gene Location: 1599647-1600414 bp Feature: gene Location: 1600496-1600957 bp Ori: QIN35446.1 Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 1600718-1600934 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 1 60071 8-1 600934 bp Feature: gene Location: 1601126-1601365 bp Feature: gene Location: 1601304-1602269 bp Feature: gene Location: 2137736-2137930 bp Feature: domain Description: PRK07533 Location: 2137739-2137931 bp Feature: domain Description: PRK07533 Location: 21 37739-21 37931 bp Feature: gene Location: 2137927-2138739 bp Ori: QIN35869.1 Feature: domain Description: PRK13169 Location: 2137960-2138134 bp Feature: domain Description: PRK1 31 69 Location: 21 37960-21 381 34 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2138425-2138680 bp Feature: domain Description: DDE_Tnp_IS66 Location: 21 38425-21 38680 bp Feature: gene Location: 2139053-2140387 bp Ori: QIN35870.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2139338-2140025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 39338-21 40025 bp Feature: domain Description: GIIM Note: maturase Location: 2140094-2140313 bp Feature: domain Description: GIIM Note: maturase Location: 21 40094-21 4031 3 bp Feature: gene Location: 2140960-2141823 bp Ori: QIN35871.1 Feature: domain Description: MhpC Location: 2141179-2141761 bp Feature: domain Description: MhpC Location: 21 41 1 79-21 41 761 bp Feature: gene Location: 2142263-2143375 bp Ori: QIN35872.1 Feature: domain Description: PRK13516 Location: 2142266-2143370 bp Feature: domain Description: PRK1 351 6 Location: 21 42266-21 43370 bp Feature: gene Location: 2149883-2152294 bp Ori: QIN35877.1 Feature: domain Description: SidC_N Location: 2149895-2151275 bp Feature: domain Description: SidC_N Location: 21 49895-21 51 275 bp Feature: gene Location: 2152227-2152463 bp Feature: gene Location: 2152547-2153485 bp Ori: QIN35879.1 Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 2152772-2153354 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 21 52772-21 53354 bp Feature: gene Location: 2153599-2154492 bp Ori: QIN35880.1 Feature: domain Description: DDE_Tnp_1_3 Location: 2153926-2154376 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 21 53926-21 54376 bp Feature: gene Location: 2154565-2155623 bp Ori: QIN35881.1 Feature: domain Description: MS_channel Location: 2154970-2155579 bp Feature: domain Description: MS_channel Location: 21 54970-21 55579 bp Feature: gene Location: 2426009-2426965 bp Feature: gene Location: 2426916-2427194 bp Feature: gene Location: 2427344-2427775 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 2427566-2427776 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 2427566-2427776 bp Feature: gene Location: 2428275-2428457 bp Feature: gene Location: 2428637-2429839 bp Ori: QIN36116.1 Feature: domain Description: RND_mfp Location: 2428745-2429246 bp Feature: domain Description: RND_mfp Location: 2428745-2429246 bp Feature: domain Description: HlyD_3 Location: 2429261-2429549 bp Feature: domain Description: HlyD_3 Location: 2429261 -2429549 bp Feature: domain Description: PRK11556 Location: 2429600-2429792 bp Feature: domain Description: PRK1 1 556 Location: 2429600-2429792 bp Feature: gene Location: 3394972-3395667 bp Ori: QIN36890.1 Feature: domain Description: Asp_Arg_Hydrox Location: 3395260-3395557 bp Feature: domain Description: Asp_Arg_Hydrox Location: 3395260-3395557 bp Feature: gene Location: 3396014-3404044 bp Ori: QIN36891.1 Feature: domain Description: GHD Location: 3399275-3399383 bp Feature: domain Description: GHD Location: 3399275-3399383 bp Feature: domain Description: GHD Location: 3400199-3400307 bp Feature: domain Description: GHD Location: 34001 99-3400307 bp Feature: domain Description: DUF5122 Location: 3402161-3402248 bp Feature: domain Description: DUF51 22 Location: 34021 61 -3402248 bp Feature: domain Description: DUF5122 Location: 3402293-3402359 bp Feature: domain Description: DUF51 22 Location: 3402293-3402359 bp Feature: domain Description: DUF5122 Location: 3402443-3402503 bp Feature: domain Description: DUF51 22 Location: 3402443-3402503 bp Feature: domain Description: DUF5122 Location: 3402737-3402791 bp Feature: domain Description: DUF51 22 Location: 3402737-3402791 bp Feature: domain Description: DUF5122 Location: 3402869-3402935 bp Feature: domain Description: DUF51 22 Location: 3402869-3402935 bp Feature: domain Description: DUF5122 Location: 3403790-3403871 bp Feature: domain Description: DUF51 22 Location: 3403790-3403871 bp Feature: gene Location: 3404160-3405494 bp Ori: QIN36892.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3404445-3405132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3404445-34051 32 bp Feature: domain Description: GIIM Note: maturase Location: 3405201-3405420 bp Feature: domain Description: GIIM Note: maturase Location: 3405201 -3405420 bp Feature: gene Location: 3405918-3407900 bp Ori: QIN36893.1 Feature: domain Description: FN3 Location: 3406338-3406593 bp Feature: domain Description: FN3 Location: 3406338-3406593 bp Feature: domain Description: Flg_new Location: 3406605-3406773 bp Feature: domain Description: Flg_new Location: 3406605-3406773 bp Feature: domain Description: tauD Location: 3407421-3407541 bp Feature: domain Description: tauD Location: 3407421 -3407541 bp Feature: gene Location: 3408463-3409209 bp Ori: QIN36894.1 Feature: domain Description: PRK06138 Location: 3408472-3409204 bp Feature: domain Description: PRK061 38 Location: 3408472-3409204 bp Feature: gene Location: 3913860-3915506 bp Ori: QIN37267.1 Feature: domain Description: PRK10060 Location: 3914184-3915477 bp Feature: domain Description: PRK1 0060 Location: 391 41 84-391 5477 bp Feature: gene Location: 3915532-3915942 bp Feature: gene Location: 3916259-3917644 bp Ori: QIN37269.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 3916496-3917132 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 391 6496-391 71 32 bp Feature: gene Location: 3917619-3917825 bp Feature: domain Description: CAP_ED Location: 3917658-3917811 bp Feature: domain Description: CAP_ED Location: 391 7658-391 781 1 bp Feature: gene Location: 3918765-3919014 bp Ori: QIN37270.1 Feature: domain Description: HTH_Tnp_1 Location: 3918801-3918999 bp Feature: domain Description: HTH_Tnp_1 Location: 391 8801 -391 8999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YciA (COG1607), COG3666 (Transposase ), DDE_Tnp_1_3 (pfam13612), DDE_Tnp_1_6 (pfam13751), RVT_N (pfam13655), RVT-GII, PRK11768 (serine/threonine protein kinase), DEAH_box_HrpB (TIGR01970), PRK08961 (bifunctional aspartate kinase/diaminopimelate decarboxylase), Toluene_X (pfam03349)
GIIM (pfam08388), ALAD_PBGS (cl00338), Acetyltransf_3 (pfam13302), RVT-UG18, PRK07533 (enoyl- reductase FabI), PRK13169 (DNA replication initiation control protein YabA), DDE_Tnp_IS66 (pfam03050), MhpC (COG0596), PRK13516 (gamma-glutamyl:cysteine ligase; Provisional), SidC_N (pfam18219)
MS_channel (pfam00924), RND_mfp (TIGR01730), HlyD_3 (pfam13437), PRK11556 (MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit), Asp_Arg_Hydrox (pfam05118), GHD (pfam17834), DUF5122 (pfam17164), FN3 (smart00060), Flg_new (pfam09479), tauD (PRK09553)
PRK06138 (SDR family oxidoreductase), PRK10060 (cyclic di-GMP phosphodiesterase), RVT-DGRs/RVT-UG26/RVT-CRISPR/RVT-UG27(RVT-UNC), CAP_ED (cl00047), HTH_Tnp_1 (pfam01527)