myRT

myRT report for GCA_011492885.1_ASM1149288v1

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Seq: CP049353.1 Escherichia coli strain T28R chromosome, complete genome (4606706 bp)
Overview 1 RT 1: 2380768-2385041 bp 2 RT 2: 2387494-2398401 bp Neighborhood of RT #1 [2380768, 2385043] PHA02517 PHA02517 RVT-GII GIIM PHA02517 DDE_Tnp_IS1 Neighborhood of RT #2 [2387494, 2398415] PRK11447 RAYT RVT-GII GIIM PRK11114 bcsA Feature: gene Location: 2380768-2381481 bp Feature: domain Description: PHA02517 Location: 2380774-2381452 bp Feature: domain Description: PHA0251 7 Location: 2380774-2381 452 bp Feature: gene Location: 2381480-2381968 bp Feature: domain Description: PHA02517 Location: 2381483-2381933 bp Feature: domain Description: PHA0251 7 Location: 2381 483-2381 933 bp Feature: gene Location: 2382049-2383557 bp Ori: QIN76652.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2382307-2383039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2382307-2383039 bp Feature: domain Description: GIIM Note: maturase Location: 2383114-2383312 bp Feature: domain Description: GIIM Note: maturase Location: 23831 1 4-238331 2 bp Feature: gene Location: 2384230-2384622 bp Feature: domain Description: PHA02517 Location: 2384287-2384623 bp Feature: domain Description: PHA0251 7 Location: 2384287-2384623 bp Feature: gene Location: 2384639-2385043 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2384651-2385041 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2384651 -2385041 bp Feature: gene Location: 2387494-2390967 bp Ori: QIN74717.1 Gene: bcsC Feature: domain Description: PRK11447 Location: 2387497-2390962 bp Feature: domain Description: PRK1 1 447 Location: 2387497-2390962 bp Feature: gene Location: 2391434-2391820 bp Gene: tnpA Feature: domain Description: RAYT Location: 2391479-2391821 bp Feature: domain Description: RAYT Location: 2391 479-2391 821 bp Feature: gene Location: 2392006-2393352 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2392294-2392912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2392294-239291 2 bp Feature: domain Description: GIIM Note: maturase Location: 2392960-2393191 bp Feature: domain Description: GIIM Note: maturase Location: 2392960-23931 91 bp Feature: gene Location: 2394096-2396246 bp Ori: QIN74718.1 Feature: domain Description: PRK11114 Location: 2394156-2396229 bp Feature: domain Description: PRK1 1 1 1 4 Location: 23941 56-2396229 bp Feature: gene Location: 2396310-2398415 bp Ori: QIN74719.1 Gene: bcsA Feature: domain Description: bcsA Location: 2396352-2398401 bp Feature: domain Description: bcsA Location: 2396352-2398401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS1 (pfam03400), PRK11447 (cellulose synthase subunit BcsC; Provisional), RAYT (COG1943), PRK11114 (cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB), bcsA (PRK11498)

Seq: CP049355.1 Escherichia coli strain T28R plasmid pT28R-2, complete sequence (161057 bp)
Overview 1 RT 1: 7425-11524 bp Neighborhood of RT #1 [7425, 11666] rve_3 InsE RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 7425-7583 bp Ori: QIN76949.1 Feature: domain Description: rve_3 Location: 7434-7560 bp Feature: domain Description: rve_3 Location: 7434-7560 bp Feature: gene Location: 7767-8506 bp Feature: domain Description: InsE Location: 7770-8109 bp Feature: domain Description: InsE Location: 7770-8109 bp Feature: gene Location: 9179-10687 bp Ori: QIN77075.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9437-10169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9437-10169 bp Feature: domain Description: GIIM Note: maturase Location: 10244-10442 bp Feature: domain Description: GIIM Note: maturase Location: 102 44-10442 bp Feature: gene Location: 10771-11250 bp Feature: domain Description: PHA02517 Location: 10774-11248 bp Feature: domain Description: PHA02 517 Location: 10774-112 48 bp Feature: gene Location: 11398-11666 bp Feature: domain Description: PHA02517 Location: 11401-11524 bp Feature: domain Description: PHA02 517 Location: 11401-1152 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)