myRT

myRT report for GCA_011493005.1_ASM1149300v1

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Seq: CP049158.1 Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence (1826371 bp)
Overview 1 RT 1: 1769504-1773346 bp Neighborhood of RT #1 [1769504, 1773426] RVT-Retrons DUF2326 Feature: gene Location: 1769504-1769857 bp Feature: gene Location: 1771050-1771544 bp Feature: gene Location: 1771592-1772284 bp Ori: QIN67036.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1771727-1772216 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 771 727-1 77221 6 bp Feature: gene Location: 1772467-1772688 bp Feature: gene Location: 1772896-1773426 bp Ori: QIN67038.1 Feature: domain Description: DUF2326 Location: 1772974-1773346 bp Feature: domain Description: DUF2326 Location: 1 772974-1 773346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF2326 (pfam10088)

Seq: CP049159.1 Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence (734052 bp)
Overview 1 RT 1: 116536-122279 bp 2 RT 2: 706463-712381 bp Neighborhood of RT #1 [116536, 122530] Transposase_mut RVT-GII GIIM HTH_Tnp_ISL3 DDE_Tnp_ISL3 TIGR03545 DUF748 Neighborhood of RT #2 [706463, 712452] KfrA_N Tra8 RVT-GII GIIM Tra8 xerC Feature: gene Location: 116536-117804 bp Ori: QIN67209.1 Feature: domain Description: Transposase_mut Location: 116551-117694 bp Feature: domain Description: Transposase_mut Location: 116551-117694 bp Feature: gene Location: 117876-118145 bp Feature: gene Location: 118138-119385 bp Ori: QIN67211.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118342-119002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118342 -119002 bp Feature: domain Description: GIIM Note: maturase Location: 119083-119305 bp Feature: domain Description: GIIM Note: maturase Location: 119083-119305 bp Feature: gene Location: 119469-120695 bp Ori: QIN67212.1 Feature: domain Description: HTH_Tnp_ISL3 Location: 119751-119889 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 119751-119889 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 119934-120636 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 119934-12 0636 bp Feature: gene Location: 121403-122530 bp Ori: QIN67213.1 Feature: domain Description: TIGR03545 Location: 121550-121826 bp Feature: domain Description: TIGR03545 Location: 12 1550-12 182 6 bp Feature: domain Description: DUF748 Location: 121850-122279 bp Feature: domain Description: DUF748 Location: 12 1850-12 2 2 79 bp Feature: gene Location: 706463-707488 bp Ori: QIN67775.1 Feature: domain Description: KfrA_N Location: 706559-706892 bp Feature: domain Description: KfrA_N Location: 706559-706892 bp Feature: gene Location: 707627-708439 bp Ori: QIN67776.1 Feature: domain Description: Tra8 Location: 707639-708425 bp Feature: domain Description: Tra8 Location: 707639-70842 5 bp Feature: gene Location: 709621-710865 bp Ori: QIN67777.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 709825-710482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70982 5-710482 bp Feature: domain Description: GIIM Note: maturase Location: 710560-710794 bp Feature: domain Description: GIIM Note: maturase Location: 710560-710794 bp Feature: gene Location: 710918-711169 bp Ori: QIN67778.1 Feature: domain Description: Tra8 Location: 710945-711140 bp Feature: domain Description: Tra8 Location: 710945-711140 bp Feature: gene Location: 711253-712452 bp Ori: QIN67779.1 Gene: xerC_18 Feature: domain Description: xerC Location: 711442-712381 bp Feature: domain Description: xerC Location: 711442 -712 381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), RVT-GII, GIIM (pfam08388), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), TIGR03545 (TIGR03545 family protein), DUF748 (pfam05359), KfrA_N (pfam11740), Tra8 (COG2826), xerC (PRK01287)

Seq: CP049156.1 Caballeronia sp. SBC1 chromosome, complete genome (4010354 bp)
Overview 1 RT 1: 2878560-2882986 bp Neighborhood of RT #1 [2878560, 2883048] FemAB_like RVT-UG11 DUF1837 Feature: gene Location: 2878560-2879387 bp Ori: QIN62576.1 Feature: domain Description: FemAB_like Location: 2878563-2879379 bp Feature: domain Description: FemAB_like Location: 2878563 -28793 79 bp Feature: gene Location: 2879569-2879958 bp Feature: gene Location: 2880096-2880869 bp Ori: QIN62578.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2880222-2880675 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2880222-2880675 bp Feature: gene Location: 2880841-2880984 bp Feature: gene Location: 2882209-2883048 bp Ori: QIN62580.1 Feature: domain Description: DUF1837 Location: 2882311-2882986 bp Feature: domain Description: DUF183 7 Location: 28823 11-2882986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FemAB_like (pfam04339), RVT-UG11, DUF1837 (pfam08878)

Seq: CP049157.1 Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence (1996666 bp)
Overview 1 RT 1: 1276640-1282644 bp Neighborhood of RT #1 [1276640, 1282652] Zn_Tnp_IS91 Y2_Tnp RVT-UG7 DUF1090 PRK11667 Feature: gene Location: 1276640-1277641 bp Ori: QIN64801.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1276649-1276766 bp Feature: domain Description: Zn_Tnp_IS91 Location: 127664 9-1276766 bp Feature: domain Description: Y2_Tnp Location: 1276892-1277450 bp Feature: domain Description: Y2_Tnp Location: 1276892-12774 50 bp Feature: gene Location: 1278187-1279179 bp Feature: gene Location: 1279328-1280899 bp Ori: QIN64803.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1279742-1280141 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 127974 2-128014 1 bp Feature: gene Location: 1281624-1282004 bp Ori: QIN64804.1 Feature: domain Description: DUF1090 Location: 1281669-1281978 bp Feature: domain Description: DUF1090 Location: 1281669-1281978 bp Feature: gene Location: 1282176-1282652 bp Ori: QIN64805.1 Feature: domain Description: PRK11667 Location: 1282182-1282644 bp Feature: domain Description: PRK11667 Location: 1282182-128264 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), RVT-UG7, DUF1090 (pfam06476), PRK11667 (hypothetical protein; Provisional)