myRT

myRT report for GCA_011604625.1_ASM1160462v1

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Seq: CP050064.1 Bradyrhizobium diazoefficiens strain 172S4 chromosome, complete genome (9157024 bp)
Overview 1 RT 1: 1748314-1753962 bp 2 RT 2: 5796344-5806370 bp 3 RT 3: 5856723-5860392 bp 4 RT 4: 5915447-5921794 bp 5 RT 5: 6075693-6081180 bp 6 RT 6: 7245762-7252680 bp 7 RT 7: 7772112-7779177 bp 8 RT 8: 7952851-7959734 bp 9 RT 9: 8037769-8042701 bp 10 RT 10: 8060369-8066468 bp 11 RT 11: 8197940-8203457 bp 12 RT 12: 8458782-8465065 bp 13 RT 13: 8641125-8646705 bp Neighborhood of RT #1 [1748314, 1753991] cysK COG3514 RVT-GII GIIM COG4249 PG_binding_1 RhaT Neighborhood of RT #2 [5796344, 5806384] P_ylase 4HBT_3 RVT-GII GIIM PRK09344 TPR_12 TPR_12 TPR_12 TPR_10 CHAT Neighborhood of RT #3 [5856723, 5860578] DDE_Tnp_1_4 RVT-GII RVT-GII MmsB Rve Rve Neighborhood of RT #4 [5915447, 5921794] COG4584 IstB_IS21 RVT-GII rve Neighborhood of RT #5 [6075693, 6081203] BaeS COG4567 RVT-GII GIIM CdnL PreA DUF3470 Neighborhood of RT #6 [7245762, 7252694] PRK08242 fadJ RVT-GII GIIM PRK10542 Neighborhood of RT #7 [7772112, 7779242] DUF4096 RVT-GII DDE_5 DUF1521 DUF1521 Neighborhood of RT #8 [7952851, 7959823] IstB_IS21_ATP IstB_IS21 IS285 IS285 RVT-GII group_II_RT_mat CpaD Neighborhood of RT #9 [8037769, 8042797] COG5659 RVT-GII DDE_5 DUF4096 Neighborhood of RT #10 [8060369, 8066468] DUF4096 RVT-GII DDE_5 Neighborhood of RT #11 [8197940, 8204109] RVT-GII GIIM HTH_Tnp_1 COG3547 Neighborhood of RT #12 [8458782, 8465136] HTH_MARR DLH RVT-GII GIIM AmpC SDR_a4 Neighborhood of RT #13 [8641125, 8646705] ErfK RVT-GII GIIM PGDH_like_1 Feature: gene Location: 1748314-1749291 bp Ori: QIO91659.1 Gene: cysK Feature: domain Description: cysK Location: 1748386-1749280 bp Feature: domain Description: cysK Location: 1 748386-1 749280 bp Feature: gene Location: 1749295-1749534 bp Ori: QIO91660.1 Feature: domain Description: COG3514 Location: 1749340-1749523 bp Feature: domain Description: COG351 4 Location: 1 749340-1 749523 bp Feature: gene Location: 1750013-1751389 bp Ori: QIO91661.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1750340-1750958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 750340-1 750958 bp Feature: domain Description: GIIM Note: maturase Location: 1751009-1751219 bp Feature: domain Description: GIIM Note: maturase Location: 1 751 009-1 751 21 9 bp Feature: gene Location: 1751487-1752914 bp Ori: QIO91662.1 Feature: domain Description: COG4249 Location: 1751553-1752330 bp Feature: domain Description: COG4249 Location: 1 751 553-1 752330 bp Feature: domain Description: PG_binding_1 Location: 1752564-1752720 bp Feature: domain Description: PG_binding_1 Location: 1 752564-1 752720 bp Feature: gene Location: 1753116-1753991 bp Ori: QIO91663.1 Feature: domain Description: RhaT Location: 1753143-1753962 bp Feature: domain Description: RhaT Location: 1 7531 43-1 753962 bp Feature: gene Location: 5796344-5798860 bp Ori: QIO95098.1 Feature: domain Description: P_ylase Location: 5796437-5798807 bp Feature: domain Description: P_ylase Location: 5796437-5798807 bp Feature: gene Location: 5799028-5799843 bp Ori: QIO95099.1 Feature: domain Description: 4HBT_3 Location: 5799130-5799832 bp Feature: domain Description: 4HBT_3 Location: 57991 30-5799832 bp Feature: gene Location: 5800040-5801416 bp Ori: QIO95100.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5800367-5800985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5800367-5800985 bp Feature: domain Description: GIIM Note: maturase Location: 5801036-5801246 bp Feature: domain Description: GIIM Note: maturase Location: 5801 036-5801 246 bp Feature: gene Location: 5801889-5803505 bp Ori: QIO95101.1 Feature: domain Description: PRK09344 Location: 5801928-5803485 bp Feature: domain Description: PRK09344 Location: 5801 928-5803485 bp Feature: gene Location: 5803790-5806384 bp Ori: QIO95102.1 Feature: domain Description: TPR_12 Location: 5803892-5804099 bp Feature: domain Description: TPR_1 2 Location: 5803892-5804099 bp Feature: domain Description: TPR_12 Location: 5804138-5804351 bp Feature: domain Description: TPR_1 2 Location: 58041 38-5804351 bp Feature: domain Description: TPR_12 Location: 5804378-5804600 bp Feature: domain Description: TPR_1 2 Location: 5804378-5804600 bp Feature: domain Description: TPR_10 Location: 5804636-5804720 bp Feature: domain Description: TPR_1 0 Location: 5804636-5804720 bp Feature: domain Description: CHAT Location: 5805353-5806370 bp Feature: domain Description: CHAT Location: 5805353-5806370 bp Feature: gene Location: 5856723-5857127 bp Feature: gene Location: 5857300-5857755 bp Ori: QIO95145.1 Feature: domain Description: DDE_Tnp_1_4 Location: 5857336-5857510 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 5857336-585751 0 bp Feature: gene Location: 5857854-5859332 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5858262-5858340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5858262-5858340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5858592-5858955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5858592-5858955 bp Feature: gene Location: 5859705-5859824 bp Feature: domain Description: MmsB Location: 5859708-5859816 bp Feature: domain Description: MmsB Location: 5859708-585981 6 bp Feature: gene Location: 5859840-5860578 bp Feature: domain Description: Rve Location: 5859867-5860032 bp Feature: domain Description: Rve Location: 5859867-5860032 bp Feature: domain Description: Rve Location: 5860149-5860392 bp Feature: domain Description: Rve Location: 58601 49-5860392 bp Feature: gene Location: 5915447-5916946 bp Ori: QIO95184.1 Feature: domain Description: COG4584 Location: 5915516-5916302 bp Feature: domain Description: COG4584 Location: 591 551 6-591 6302 bp Feature: gene Location: 5916946-5917809 bp Ori: QIO95185.1 Feature: domain Description: IstB_IS21 Location: 5917108-5917633 bp Feature: domain Description: IstB_IS21 Location: 591 71 08-591 7633 bp Feature: gene Location: 5917716-5918441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5918043-5918349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 591 8043-591 8349 bp Feature: gene Location: 5919734-5921245 bp Ori: QIO95186.1 Feature: domain Description: rve Location: 5920241-5920562 bp Feature: domain Description: rve Location: 5920241 -5920562 bp Feature: gene Location: 5921386-5921794 bp Feature: gene Location: 6075693-6077090 bp Ori: QIO95315.1 Feature: domain Description: BaeS Location: 6075990-6077061 bp Feature: domain Description: BaeS Location: 6075990-6077061 bp Feature: gene Location: 6077080-6077613 bp Ori: QIO95316.1 Feature: domain Description: COG4567 Location: 6077086-6077611 bp Feature: domain Description: COG4567 Location: 6077086-607761 1 bp Feature: gene Location: 6077875-6079251 bp Ori: QIO95317.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6078202-6078820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6078202-6078820 bp Feature: domain Description: GIIM Note: maturase Location: 6078871-6079081 bp Feature: domain Description: GIIM Note: maturase Location: 6078871 -6079081 bp Feature: gene Location: 6079732-6080520 bp Ori: QIO95318.1 Feature: domain Description: CdnL Location: 6079930-6080407 bp Feature: domain Description: CdnL Location: 6079930-6080407 bp Feature: gene Location: 6080865-6081203 bp Ori: QIO95319.1 Feature: domain Description: PreA Location: 6080877-6081051 bp Feature: domain Description: PreA Location: 6080877-6081 051 bp Feature: domain Description: DUF3470 Location: 6081057-6081180 bp Feature: domain Description: DUF3470 Location: 6081 057-6081 1 80 bp Feature: gene Location: 7245762-7246970 bp Ori: QIO96298.1 Feature: domain Description: PRK08242 Location: 7245765-7246968 bp Feature: domain Description: PRK08242 Location: 7245765-7246968 bp Feature: gene Location: 7246991-7249204 bp Ori: QIO96299.1 Feature: domain Description: fadJ Location: 7247003-7249175 bp Feature: domain Description: fadJ Location: 7247003-72491 75 bp Feature: gene Location: 7249677-7251053 bp Ori: QIO96300.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7250004-7250622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7250004-7250622 bp Feature: domain Description: GIIM Note: maturase Location: 7250673-7250883 bp Feature: domain Description: GIIM Note: maturase Location: 7250673-7250883 bp Feature: gene Location: 7251528-7251851 bp Feature: gene Location: 7252080-7252694 bp Ori: QIO96302.1 Gene: gstA Feature: domain Description: PRK10542 Location: 7252083-7252680 bp Feature: domain Description: PRK1 0542 Location: 7252083-7252680 bp Feature: gene Location: 7772112-7772303 bp Feature: gene Location: 7772737-7773493 bp Feature: domain Description: DUF4096 Location: 7772761-7772974 bp Feature: domain Description: DUF4096 Location: 7772761 -7772974 bp Feature: gene Location: 7773881-7775356 bp Ori: QIO96739.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7774289-7774979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7774289-7774979 bp Feature: gene Location: 7775455-7776804 bp Ori: QIO96740.1 Feature: domain Description: DDE_5 Location: 7775533-7776325 bp Feature: domain Description: DDE_5 Location: 7775533-7776325 bp Feature: gene Location: 7777704-7779242 bp Ori: QIO96741.1 Feature: domain Description: DUF1521 Location: 7778040-7778541 bp Feature: domain Description: DUF1 521 Location: 7778040-7778541 bp Feature: domain Description: DUF1521 Location: 7778676-7779177 bp Feature: domain Description: DUF1 521 Location: 7778676-77791 77 bp Feature: gene Location: 7952851-7953555 bp Ori: QIO96868.1 Feature: domain Description: IstB_IS21_ATP Location: 7952872-7952956 bp Feature: domain Description: IstB_IS21 _ATP Location: 7952872-7952956 bp Feature: domain Description: IstB_IS21 Location: 7952962-7953481 bp Feature: domain Description: IstB_IS21 Location: 7952962-7953481 bp Feature: gene Location: 7954349-7954792 bp Feature: domain Description: IS285 Location: 7954352-7954427 bp Feature: domain Description: IS285 Location: 7954352-7954427 bp Feature: domain Description: IS285 Location: 7954664-7954790 bp Feature: domain Description: IS285 Location: 7954664-7954790 bp Feature: gene Location: 7955062-7956357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7955416-7955737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 795541 6-7955737 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7955824-7956250 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7955824-7956250 bp Feature: gene Location: 7956650-7958965 bp Feature: gene Location: 7959161-7959823 bp Ori: QIO96870.1 Feature: domain Description: CpaD Location: 7959194-7959734 bp Feature: domain Description: CpaD Location: 79591 94-7959734 bp Feature: gene Location: 8037769-8038059 bp Feature: domain Description: COG5659 Location: 8037778-8037943 bp Feature: domain Description: COG5659 Location: 8037778-8037943 bp Feature: gene Location: 8038060-8038594 bp Feature: gene Location: 8039036-8040511 bp Ori: QIO96916.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8039444-8040134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8039444-80401 34 bp Feature: gene Location: 8040635-8041993 bp Ori: QIO96917.1 Feature: domain Description: DDE_5 Location: 8040725-8041514 bp Feature: domain Description: DDE_5 Location: 8040725-8041 51 4 bp Feature: gene Location: 8042464-8042797 bp Ori: QIO96918.1 Feature: domain Description: DUF4096 Location: 8042488-8042701 bp Feature: domain Description: DUF4096 Location: 8042488-8042701 bp Feature: gene Location: 8060369-8061205 bp Feature: gene Location: 8061626-8062382 bp Feature: domain Description: DUF4096 Location: 8061650-8061863 bp Feature: domain Description: DUF4096 Location: 8061 650-8061 863 bp Feature: gene Location: 8062770-8064245 bp Ori: QIO96923.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8063178-8063868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80631 78-8063868 bp Feature: gene Location: 8064369-8065719 bp Feature: domain Description: DDE_5 Location: 8064447-8065239 bp Feature: domain Description: DDE_5 Location: 8064447-8065239 bp Feature: gene Location: 8066136-8066468 bp Feature: gene Location: 8197940-8198239 bp Feature: gene Location: 8198707-8198940 bp Feature: gene Location: 8200449-8201693 bp Ori: QIO97003.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8200650-8201307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8200650-8201 307 bp Feature: domain Description: GIIM Note: maturase Location: 8201385-8201613 bp Feature: domain Description: GIIM Note: maturase Location: 8201 385-8201 61 3 bp Feature: gene Location: 8201870-8202974 bp Feature: domain Description: HTH_Tnp_1 Location: 8201876-8202083 bp Feature: domain Description: HTH_Tnp_1 Location: 8201 876-8202083 bp Feature: gene Location: 8203064-8204109 bp Feature: domain Description: COG3547 Location: 8203082-8203457 bp Feature: domain Description: COG3547 Location: 8203082-8203457 bp Feature: gene Location: 8458782-8459360 bp Ori: QIO97208.1 Feature: domain Description: HTH_MARR Location: 8458851-8459085 bp Feature: domain Description: HTH_MARR Location: 8458851 -8459085 bp Feature: gene Location: 8460025-8460912 bp Ori: QIO97209.1 Feature: domain Description: DLH Location: 8460205-8460898 bp Feature: domain Description: DLH Location: 8460205-8460898 bp Feature: gene Location: 8461428-8462804 bp Ori: QIO97210.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8461755-8462373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8461 755-8462373 bp Feature: domain Description: GIIM Note: maturase Location: 8462424-8462634 bp Feature: domain Description: GIIM Note: maturase Location: 8462424-8462634 bp Feature: gene Location: 8462899-8464167 bp Ori: QIO97211.1 Feature: domain Description: AmpC Location: 8462905-8464114 bp Feature: domain Description: AmpC Location: 8462905-84641 1 4 bp Feature: gene Location: 8464285-8465136 bp Ori: QIO97212.1 Feature: domain Description: SDR_a4 Location: 8464294-8465065 bp Feature: domain Description: SDR_a4 Location: 8464294-8465065 bp Feature: gene Location: 8641125-8641940 bp Feature: gene Location: 8642261-8643463 bp Ori: QIO97356.1 Feature: domain Description: ErfK Location: 8642624-8643317 bp Feature: domain Description: ErfK Location: 8642624-864331 7 bp Feature: gene Location: 8643939-8645315 bp Ori: QIO97357.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8644266-8644884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8644266-8644884 bp Feature: domain Description: GIIM Note: maturase Location: 8644935-8645145 bp Feature: domain Description: GIIM Note: maturase Location: 8644935-86451 45 bp Feature: gene Location: 8645396-8646358 bp Ori: QIO97358.1 Feature: domain Description: PGDH_like_1 Location: 8645411-8646332 bp Feature: domain Description: PGDH_like_1 Location: 864541 1 -8646332 bp Feature: gene Location: 8646490-8646705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cysK (TIGR01139), COG3514 (Uncharacterized conserved protein, DUF4415 family ), RVT-GII, GIIM (pfam08388), COG4249 (Uncharacterized protein, contains caspase domain ), PG_binding_1 (pfam01471), RhaT (TIGR00776), P_ylase (TIGR02093), 4HBT_3 (pfam13622), PRK09344 (phosphoenolpyruvate carboxykinase)
TPR_12 (pfam13424), TPR_10 (pfam13374), CHAT (pfam12770), DDE_Tnp_1_4 (pfam13701), MmsB (COG2084), Rve (COG3316), COG4584 (Transposase ), IstB_IS21 (pfam01695), rve (pfam00665), BaeS (COG0642)
COG4567 (Two-component response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains ), CdnL (COG1329), PreA (COG1146), DUF3470 (pfam11953), PRK08242 (acetyl-CoA C-acetyltransferase), fadJ (PRK11154), PRK10542 (glutathionine S-transferase; Provisional), DUF4096 (pfam13340), DDE_5 (pfam13546), DUF1521 (pfam07481)
IstB_IS21_ATP (pfam08483), IS285 (COG3328), group_II_RT_mat (TIGR04416), CpaD (COG5461), COG5659 (SRSO17 transposase ), HTH_Tnp_1 (pfam01527), COG3547 (Transposase ), HTH_MARR (smart00347), DLH (pfam01738), AmpC (COG1680)
SDR_a4 (cd05266), ErfK (COG1376), PGDH_like_1 (cd12169)