myRT

myRT report for GCA_011742415.2_ASM1174241v2

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Seq: CP053772.1 Klebsiella pneumoniae strain BP3636 plasmid pvirulence_VBP3636, complete sequence (317680 bp)
Overview 1 RT 1: 194005-200537 bp 2 RT 2: 243709-248722 bp Neighborhood of RT #1 [194005, 200537] umuC PRK10276 RVT-GII cas7_csf2 Neighborhood of RT #2 [243709, 248722] HHA RVT-GII INT_Cre_C Feature: gene Location: 194005-195276 bp Ori: QLF61579.1 Gene: umuC Feature: domain Description: umuC Location: 194008-195268 bp Feature: domain Description: umuC Location: 1 94008-1 95268 bp Feature: gene Location: 195276-195698 bp Ori: QLF61580.1 Gene: umuD Feature: domain Description: PRK10276 Location: 195282-195684 bp Feature: domain Description: PRK1 0276 Location: 1 95282-1 95684 bp Feature: gene Location: 195784-197271 bp Ori: QLF61581.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196189-196879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 961 89-1 96879 bp Feature: gene Location: 198794-199585 bp Ori: QLF61689.1 Feature: domain Description: cas7_csf2 Location: 199115-199529 bp Feature: domain Description: cas7_csf2 Location: 1 991 1 5-1 99529 bp Feature: gene Location: 199830-200537 bp Feature: gene Location: 243709-244776 bp Feature: gene Location: 244862-245116 bp Ori: QLF61619.1 Feature: domain Description: HHA Location: 244913-245096 bp Feature: domain Description: HHA Location: 24491 3-245096 bp Feature: gene Location: 245630-247117 bp Ori: QLF61620.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246035-246725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246035-246725 bp Feature: gene Location: 247203-248339 bp Ori: QLF61621.1 Feature: domain Description: INT_Cre_C Location: 247626-248280 bp Feature: domain Description: INT_Cre_C Location: 247626-248280 bp Feature: gene Location: 248405-248722 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, cas7_csf2 (TIGR03115), HHA (pfam05321), INT_Cre_C (cd00799)

Seq: CP053771.1 Klebsiella pneumoniae strain BP3636 chromosome, complete genome (5352701 bp)
Overview 1 RT 1: 1044831-1050196 bp 2 RT 2: 3893424-3900772 bp 3 RT 3: 4417217-4420953 bp 4 RT 4: 4451595-4457093 bp 5 RT 5: 5154129-5157452 bp Neighborhood of RT #1 [1044831, 1050249] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #2 [3893424, 3900822] FimC FimD RVT-UG4 Integrase_1 PRK09692 Neighborhood of RT #3 [4417217, 4420953] DUF551 RVT-GII PRK10597 Neighborhood of RT #4 [4451595, 4457104] RVT-GII PRK10276 PRK05433 Neighborhood of RT #5 [5154129, 5157646] RVT-GII PRK10276 Feature: gene Location: 1044831-1046096 bp Ori: QLF57346.1 Feature: domain Description: umuC Location: 1044834-1046094 bp Feature: domain Description: umuC Location: 1044834-1046094 bp Feature: gene Location: 1046099-1046518 bp Ori: QLF57347.1 Gene: umuD Feature: domain Description: PRK10276 Location: 1046102-1046513 bp Feature: domain Description: PRK102 76 Location: 1046102 -1046513 bp Feature: gene Location: 1046597-1048084 bp Ori: QLF57348.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047002-1047692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047002 -1047692 bp Feature: gene Location: 1048700-1048942 bp Ori: QLF57349.1 Feature: domain Description: DinI Location: 1048751-1048931 bp Feature: domain Description: DinI Location: 1048751-1048931 bp Feature: gene Location: 1049113-1050249 bp Ori: QLF61198.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1049293-1050196 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 10492 93-1050196 bp Feature: gene Location: 3893424-3894188 bp Ori: QLF59838.1 Feature: domain Description: FimC Location: 3893469-3894171 bp Feature: domain Description: FimC Location: 3893469-3894171 bp Feature: gene Location: 3894235-3896829 bp Ori: QLF61323.1 Feature: domain Description: FimD Location: 3894277-3896818 bp Feature: domain Description: FimD Location: 38942 77-3896818 bp Feature: gene Location: 3896826-3898907 bp Ori: QLF59839.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3897237-3897681 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 38972 37-3897681 bp Feature: gene Location: 3898949-3899404 bp Ori: QLF61324.1 Feature: domain Description: Integrase_1 Location: 3898952-3899186 bp Feature: domain Description: Integrase_1 Location: 3898952 -3899186 bp Feature: gene Location: 3899584-3900822 bp Feature: domain Description: PRK09692 Location: 3899590-3900772 bp Feature: domain Description: PRK09692 Location: 3899590-3900772 bp Feature: gene Location: 4417217-4417693 bp Ori: QLF60326.1 Feature: domain Description: DUF551 Location: 4417478-4417676 bp Feature: domain Description: DUF551 Location: 4417478-4417676 bp Feature: gene Location: 4417852-4418079 bp Feature: gene Location: 4418799-4420286 bp Ori: QLF60328.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4419204-4419894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44192 04-4419894 bp Feature: gene Location: 4420365-4420598 bp Ori: QLF60329.1 Feature: domain Description: PRK10597 Location: 4420368-4420593 bp Feature: domain Description: PRK10597 Location: 442 0368-442 0593 bp Feature: gene Location: 4420705-4420953 bp Feature: gene Location: 4451595-4451924 bp Feature: gene Location: 4451961-4452290 bp Feature: gene Location: 4452990-4454476 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4453395-4454085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4453395-4454085 bp Feature: gene Location: 4454747-4455112 bp Ori: QLF60368.1 Feature: domain Description: PRK10276 Location: 4454792-4454915 bp Feature: domain Description: PRK102 76 Location: 4454792 -4454915 bp Feature: gene Location: 4455305-4457104 bp Ori: QLF60369.1 Gene: lepA Feature: domain Description: PRK05433 Location: 4455308-4457093 bp Feature: domain Description: PRK05433 Location: 4455308-4457093 bp Feature: gene Location: 5154129-5154458 bp Feature: gene Location: 5154495-5154823 bp Feature: gene Location: 5155525-5157012 bp Ori: QLF60973.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5155930-5156620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5155930-515662 0 bp Feature: gene Location: 5157090-5157329 bp Feature: gene Location: 5157329-5157646 bp Ori: QLF60975.1 Feature: domain Description: PRK10276 Location: 5157335-5157452 bp Feature: domain Description: PRK102 76 Location: 5157335-5157452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), PRK09692 (Integrase; provisional)
DUF551 (pfam04448), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05433 (GTP-binding protein LepA; Provisional)

Seq: CP053773.1 Klebsiella pneumoniae strain BP3636 plasmid pIncFIBK, complete sequence (105455 bp)
Overview 1 RT 1: 93518-98508 bp Neighborhood of RT #1 [93518, 98513] Antirestrict RVT-GII PRK10276 umuC Feature: gene Location: 93518-93943 bp Ori: QLF61777.1 Feature: domain Description: Antirestrict Location: 93653-93941 bp Feature: domain Description: Antirestrict Location: 93 653 -93 941 bp Feature: gene Location: 94464-94694 bp Feature: gene Location: 94928-96415 bp Ori: QLF61779.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95333-96023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 953 3 3 -96023 bp Feature: gene Location: 96817-97242 bp Ori: QLF61780.1 Gene: umuD Feature: domain Description: PRK10276 Location: 96820-97228 bp Feature: domain Description: PRK10276 Location: 96820-97228 bp Feature: gene Location: 97242-98513 bp Ori: QLF61781.1 Feature: domain Description: umuC Location: 97245-98508 bp Feature: domain Description: umuC Location: 97245-98508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)