myRT

myRT report for GCA_011742585.2_ASM1174258v2

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Seq: CP053767.1 Klebsiella pneumoniae strain BA10835 plasmid pIncFIBK, complete sequence (211810 bp)
Overview 1 RT 1: 200974-205965 bp Neighborhood of RT #1 [200974, 205970] Antirestrict RVT-GII PRK10276 umuC Feature: gene Location: 200974-201399 bp Ori: QLF67336.1 Feature: domain Description: Antirestrict Location: 201109-201397 bp Feature: domain Description: Antirestrict Location: 201 1 09-201 397 bp Feature: gene Location: 201920-202150 bp Feature: gene Location: 202384-203871 bp Ori: QLF67338.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202789-203479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202789-203479 bp Feature: gene Location: 204274-204699 bp Ori: QLF67339.1 Gene: umuD Feature: domain Description: PRK10276 Location: 204277-204685 bp Feature: domain Description: PRK1 0276 Location: 204277-204685 bp Feature: gene Location: 204699-205970 bp Ori: QLF67340.1 Feature: domain Description: umuC Location: 204702-205965 bp Feature: domain Description: umuC Location: 204702-205965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: CP053766.1 Klebsiella pneumoniae strain BA10835 plasmid pvirulence_VBA10835, complete sequence (307718 bp)
Overview 1 RT 1: 40414-46511 bp 2 RT 2: 207976-212989 bp Neighborhood of RT #1 [40414, 46519] cas7_csf2 RVT-GII PRK10276 umuC Neighborhood of RT #2 [207976, 212989] HHA RVT-GII INT_Cre_C Feature: gene Location: 40414-41121 bp Feature: gene Location: 41366-42157 bp Ori: QLF67149.1 Feature: domain Description: cas7_csf2 Location: 41687-42101 bp Feature: domain Description: cas7_csf2 Location: 41687-42 101 bp Feature: gene Location: 43253-44740 bp Ori: QLF66919.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43658-44348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43658-44348 bp Feature: gene Location: 44826-45248 bp Ori: QLF66920.1 Gene: umuD Feature: domain Description: PRK10276 Location: 44832-45234 bp Feature: domain Description: PRK102 76 Location: 44832 -452 34 bp Feature: gene Location: 45248-46519 bp Ori: QLF66921.1 Gene: umuC Feature: domain Description: umuC Location: 45251-46511 bp Feature: domain Description: umuC Location: 452 51-46511 bp Feature: gene Location: 207976-209043 bp Feature: gene Location: 209129-209383 bp Ori: QLF67066.1 Feature: domain Description: HHA Location: 209180-209363 bp Feature: domain Description: HHA Location: 2 09180-2 09363 bp Feature: gene Location: 209897-211384 bp Ori: QLF67067.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210302-210992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 10302 -2 10992 bp Feature: gene Location: 211470-212606 bp Ori: QLF67068.1 Feature: domain Description: INT_Cre_C Location: 211893-212547 bp Feature: domain Description: INT_Cre_C Location: 2 11893-2 12 547 bp Feature: gene Location: 212672-212989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cas7_csf2 (TIGR03115), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), HHA (pfam05321), INT_Cre_C (cd00799)

Seq: CP053768.1 Klebsiella pneumoniae strain BA10835 plasmid pIncFII, complete sequence (97846 bp)
Overview 1 RT 1: 42731-47628 bp Neighborhood of RT #1 [42731, 48365] DUF1380 RVT_N RVT-GII GIIM HNHc DUF3560 Feature: gene Location: 42731-43153 bp Ori: QLF67403.1 Feature: domain Description: DUF1380 Location: 42734-43031 bp Feature: domain Description: DUF13 80 Location: 4273 4-43 03 1 bp Feature: gene Location: 43150-43341 bp Feature: gene Location: 43655-45322 bp Ori: QLF67405.1 Gene: ltrA Feature: domain Description: RVT_N Location: 43703-43940 bp Feature: domain Description: RVT_N Location: 43 703 -43 940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43991-44633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 991-4463 3 bp Feature: domain Description: GIIM Note: maturase Location: 44684-44918 bp Feature: domain Description: GIIM Note: maturase Location: 44684-44918 bp Feature: domain Description: HNHc Note: nucleases Location: 45128-45287 bp Feature: domain Description: HNHc Note: nucleases Location: 45128-45287 bp Feature: gene Location: 46722-46952 bp Feature: gene Location: 47004-48365 bp Ori: QLF67407.1 Feature: domain Description: DUF3560 Location: 47271-47628 bp Feature: domain Description: DUF3 560 Location: 47271-47628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF3560 (pfam12083)

Seq: CP053765.1 Klebsiella pneumoniae strain BA10835 chromosome, complete genome (5355460 bp)
Overview 1 RT 1: 745636-752984 bp 2 RT 2: 1268334-1274020 bp 3 RT 3: 2012987-2016311 bp 4 RT 4: 3255353-3260717 bp Neighborhood of RT #1 [745636, 753034] FimC FimD RVT-UG4 Integrase_1 PRK09692 Neighborhood of RT #2 [1268334, 1274031] DUF551 RVT-GII PRK10276 PRK05433 Neighborhood of RT #3 [2012987, 2016505] RVT-GII PRK10276 Neighborhood of RT #4 [3255353, 3260770] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Feature: gene Location: 745636-746400 bp Ori: QLF62523.1 Feature: domain Description: FimC Location: 745681-746383 bp Feature: domain Description: FimC Location: 74 5681-74 6383 bp Feature: gene Location: 746447-749041 bp Ori: QLF62524.1 Feature: domain Description: FimD Location: 746489-749030 bp Feature: domain Description: FimD Location: 74 64 89-74 9030 bp Feature: gene Location: 749038-751119 bp Ori: QLF62525.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 749449-749893 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 74 94 4 9-74 9893 bp Feature: gene Location: 751161-751616 bp Ori: QLF66652.1 Feature: domain Description: Integrase_1 Location: 751164-751398 bp Feature: domain Description: Integrase_1 Location: 751164 -751398 bp Feature: gene Location: 751796-753034 bp Feature: domain Description: PRK09692 Location: 751802-752984 bp Feature: domain Description: PRK09692 Location: 751802-752984 bp Feature: gene Location: 1268334-1268810 bp Ori: QLF63015.1 Feature: domain Description: DUF551 Location: 1268595-1268793 bp Feature: domain Description: DUF551 Location: 1268595-1268793 bp Feature: gene Location: 1268969-1269196 bp Feature: gene Location: 1269916-1271403 bp Ori: QLF63017.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1270321-1271011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1270321-1271011 bp Feature: gene Location: 1271674-1272039 bp Ori: QLF63018.1 Feature: domain Description: PRK10276 Location: 1271719-1271842 bp Feature: domain Description: PRK10276 Location: 1271719-127184 2 bp Feature: gene Location: 1272232-1274031 bp Ori: QLF63019.1 Gene: lepA Feature: domain Description: PRK05433 Location: 1272235-1274020 bp Feature: domain Description: PRK054 33 Location: 1272235-1274 020 bp Feature: gene Location: 2012987-2013316 bp Feature: gene Location: 2013353-2013682 bp Feature: gene Location: 2014384-2015871 bp Ori: QLF63667.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2014789-2015479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2014 789-20154 79 bp Feature: gene Location: 2015949-2016188 bp Feature: gene Location: 2016188-2016505 bp Ori: QLF63669.1 Feature: domain Description: PRK10276 Location: 2016194-2016311 bp Feature: domain Description: PRK10276 Location: 2016194 -2016311 bp Feature: gene Location: 3255353-3256618 bp Ori: QLF64804.1 Feature: domain Description: umuC Location: 3255356-3256616 bp Feature: domain Description: umuC Location: 3255356-3256616 bp Feature: gene Location: 3256621-3257040 bp Ori: QLF64805.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3256624-3257035 bp Feature: domain Description: PRK10276 Location: 3256624 -3257035 bp Feature: gene Location: 3257119-3258606 bp Ori: QLF64806.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3257524-3258214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3257524 -3258214 bp Feature: gene Location: 3259221-3259463 bp Ori: QLF64807.1 Feature: domain Description: DinI Location: 3259272-3259452 bp Feature: domain Description: DinI Location: 3259272-32594 52 bp Feature: gene Location: 3259634-3260770 bp Ori: QLF66778.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3259814-3260717 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3259814 -3260717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), PRK09692 (Integrase; provisional), DUF551 (pfam04448), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK05433 (GTP-binding protein LepA; Provisional), umuC (PRK03609)
DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789)