myRT

myRT report for GCA_011742775.2_ASM1174277v2

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Seq: CP058799.1 Klebsiella pneumoniae strain BA27935 plasmid pvirulence_VBA27935, complete sequence (304108 bp)
Overview 1 RT 1: 39658-46182 bp 2 RT 2: 204366-209379 bp Neighborhood of RT #1 [39658, 46190] cas7_csf2 RVT-GII PRK10276 umuC Neighborhood of RT #2 [204366, 209379] HHA RVT-GII INT_Cre_C Feature: gene Location: 39658-40365 bp Feature: gene Location: 40370-41401 bp Ori: QLG18608.1 Feature: domain Description: cas7_csf2 Location: 40418-41336 bp Feature: domain Description: cas7_csf2 Location: 4041 8-41 336 bp Feature: gene Location: 42924-44411 bp Ori: QLG18609.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43329-44019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43329-4401 9 bp Feature: gene Location: 44497-44919 bp Ori: QLG18610.1 Gene: umuD Feature: domain Description: PRK10276 Location: 44503-44905 bp Feature: domain Description: PRK1 0276 Location: 44503-44905 bp Feature: gene Location: 44919-46190 bp Ori: QLG18611.1 Gene: umuC Feature: domain Description: umuC Location: 44922-46182 bp Feature: domain Description: umuC Location: 44922-461 82 bp Feature: gene Location: 204366-205433 bp Feature: gene Location: 205519-205773 bp Ori: QLG18752.1 Feature: domain Description: HHA Location: 205570-205753 bp Feature: domain Description: HHA Location: 205570-205753 bp Feature: gene Location: 206287-207774 bp Ori: QLG18753.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206692-207382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206692-207382 bp Feature: gene Location: 207860-208996 bp Ori: QLG18754.1 Feature: domain Description: INT_Cre_C Location: 208283-208937 bp Feature: domain Description: INT_Cre_C Location: 208283-208937 bp Feature: gene Location: 209062-209379 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cas7_csf2 (TIGR03115), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), HHA (pfam05321), INT_Cre_C (cd00799)

Seq: CP058801.1 Klebsiella pneumoniae strain BA27935 plasmid pIncFII, complete sequence (97004 bp)
Overview 1 RT 1: 41903-46795 bp Neighborhood of RT #1 [41903, 47532] DUF1380 RVT_N RVT-GII GIIM HNHc DUF3560 Feature: gene Location: 41903-42325 bp Ori: QLG18979.1 Feature: domain Description: DUF1380 Location: 41906-42203 bp Feature: domain Description: DUF1380 Location: 41906-42 2 03 bp Feature: gene Location: 42322-42513 bp Feature: gene Location: 42827-44494 bp Ori: QLG18981.1 Gene: ltrA Feature: domain Description: RVT_N Location: 42875-43112 bp Feature: domain Description: RVT_N Location: 42 875-43112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43163-43805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43163-43805 bp Feature: domain Description: GIIM Note: maturase Location: 43856-44090 bp Feature: domain Description: GIIM Note: maturase Location: 43856-44090 bp Feature: domain Description: HNHc Note: nucleases Location: 44300-44459 bp Feature: domain Description: HNHc Note: nucleases Location: 44300-44459 bp Feature: gene Location: 45889-46119 bp Feature: gene Location: 46171-47532 bp Ori: QLG18983.1 Feature: domain Description: DUF3560 Location: 46438-46795 bp Feature: domain Description: DUF3560 Location: 46438-46795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF3560 (pfam12083)

Seq: CP058800.1 Klebsiella pneumoniae strain BA27935 plasmid pIncFIBK, complete sequence (102871 bp)
Overview 1 RT 1: 92078-97069 bp Neighborhood of RT #1 [92078, 97074] Antirestrict RVT-GII PRK10276 umuC Feature: gene Location: 92078-92503 bp Ori: QLG18924.1 Feature: domain Description: Antirestrict Location: 92213-92501 bp Feature: domain Description: Antirestrict Location: 92213 -92501 bp Feature: gene Location: 93024-93254 bp Feature: gene Location: 93488-94975 bp Ori: QLG18926.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93893-94583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 893 -94583 bp Feature: gene Location: 95378-95803 bp Ori: QLG18927.1 Gene: umuD Feature: domain Description: PRK10276 Location: 95381-95789 bp Feature: domain Description: PRK10276 Location: 953 81-95789 bp Feature: gene Location: 95803-97074 bp Ori: QLG18928.1 Feature: domain Description: umuC Location: 95806-97069 bp Feature: domain Description: umuC Location: 95806-97069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: CP058798.1 Klebsiella pneumoniae strain BA27935 chromosome, complete genome (5356693 bp)
Overview 1 RT 1: 745747-753095 bp 2 RT 2: 1269542-1275228 bp 3 RT 3: 2014216-2017540 bp 4 RT 4: 3256566-3261930 bp Neighborhood of RT #1 [745747, 753145] FimC FimD RVT-UG4 Integrase_1 PRK09692 Neighborhood of RT #2 [1269542, 1275239] DUF551 RVT-GII PRK10276 PRK05433 Neighborhood of RT #3 [2014216, 2017734] RVT-GII PRK10276 Neighborhood of RT #4 [3256566, 3261983] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Feature: gene Location: 745747-746511 bp Ori: QLG14296.1 Feature: domain Description: FimC Location: 745792-746494 bp Feature: domain Description: FimC Location: 74 5792-74 64 94 bp Feature: gene Location: 746558-749152 bp Ori: QLG14297.1 Feature: domain Description: FimD Location: 746600-749141 bp Feature: domain Description: FimD Location: 74 6600-74 914 1 bp Feature: gene Location: 749149-751230 bp Ori: QLG14298.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 749560-750004 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 74 9560-750004 bp Feature: gene Location: 751272-751727 bp Ori: QLG18353.1 Feature: domain Description: Integrase_1 Location: 751275-751509 bp Feature: domain Description: Integrase_1 Location: 751275-751509 bp Feature: gene Location: 751907-753145 bp Feature: domain Description: PRK09692 Location: 751913-753095 bp Feature: domain Description: PRK09692 Location: 751913-753095 bp Feature: gene Location: 1269542-1270018 bp Ori: QLG14774.1 Feature: domain Description: DUF551 Location: 1269803-1270001 bp Feature: domain Description: DUF551 Location: 1269803-1270001 bp Feature: gene Location: 1270177-1270404 bp Feature: gene Location: 1271124-1272611 bp Ori: QLG14776.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1271529-1272219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1271529-1272219 bp Feature: gene Location: 1272882-1273247 bp Ori: QLG14777.1 Feature: domain Description: PRK10276 Location: 1272927-1273050 bp Feature: domain Description: PRK10276 Location: 1272927-1273050 bp Feature: gene Location: 1273440-1275239 bp Ori: QLG14778.1 Gene: lepA Feature: domain Description: PRK05433 Location: 1273443-1275228 bp Feature: domain Description: PRK054 33 Location: 12734 4 3-1275228 bp Feature: gene Location: 2014216-2014545 bp Feature: gene Location: 2014582-2014911 bp Feature: gene Location: 2015613-2017100 bp Ori: QLG15419.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2016018-2016708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2016018-2016708 bp Feature: gene Location: 2017178-2017417 bp Feature: gene Location: 2017417-2017734 bp Ori: QLG15421.1 Feature: domain Description: PRK10276 Location: 2017423-2017540 bp Feature: domain Description: PRK10276 Location: 20174 23-201754 0 bp Feature: gene Location: 3256566-3257831 bp Ori: QLG16540.1 Feature: domain Description: umuC Location: 3256569-3257829 bp Feature: domain Description: umuC Location: 3256569-3257829 bp Feature: gene Location: 3257834-3258253 bp Ori: QLG16541.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3257837-3258248 bp Feature: domain Description: PRK10276 Location: 3257837-325824 8 bp Feature: gene Location: 3258332-3259819 bp Ori: QLG16542.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3258737-3259427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3258737-32594 27 bp Feature: gene Location: 3260434-3260676 bp Ori: QLG16543.1 Feature: domain Description: DinI Location: 3260485-3260665 bp Feature: domain Description: DinI Location: 32604 85-3260665 bp Feature: gene Location: 3260847-3261983 bp Ori: QLG18472.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3261027-3261930 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3261027-3261930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), PRK09692 (Integrase; provisional), DUF551 (pfam04448), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK05433 (GTP-binding protein LepA; Provisional), umuC (PRK03609)
DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789)