myRT

myRT report for GCA_011752495.1_ASM1175249v1

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Seq: CP039524.1 Klebsiella pneumoniae subsp. pneumoniae strain HB25-1 chromosome, complete genome (5439115 bp)
Overview 1 RT 1: 1883074-1889203 bp 2 RT 2: 3054790-3057298 bp 3 RT 3: 3258397-3262496 bp 4 RT 4: 3610266-3615104 bp Neighborhood of RT #1 [1883074, 1889203] Nuc_deoxyrib_tr RVT-Retrons AAA_15 Neighborhood of RT #2 [3054790, 3057298] RVT-GII Neighborhood of RT #3 [3258397, 3262507] umuC PRK10276 RVT-GII DinI Neighborhood of RT #4 [3610266, 3615154] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Feature: gene Location: 1883074-1883943 bp Ori: QIQ37081.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 1883596-1883767 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 883596-1 883767 bp Feature: gene Location: 1883963-1884118 bp Feature: gene Location: 1884599-1885699 bp Ori: QIQ37082.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1884782-1885310 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 884782-1 88531 0 bp Feature: gene Location: 1885814-1888060 bp Ori: QIQ37083.1 Feature: domain Description: AAA_15 Location: 1885817-1886825 bp Feature: domain Description: AAA_1 5 Location: 1 88581 7-1 886825 bp Feature: gene Location: 1888973-1889203 bp Feature: gene Location: 3054790-3055074 bp Feature: gene Location: 3055088-3055159 bp Feature: gene Location: 3055152-3056636 bp Ori: QIQ38149.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3055554-3056244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3055554-3056244 bp Feature: gene Location: 3056636-3056887 bp Feature: gene Location: 3057089-3057298 bp Feature: gene Location: 3258397-3259662 bp Ori: QIQ38355.1 Gene: umuC Feature: domain Description: umuC Location: 3258400-3259660 bp Feature: domain Description: umuC Location: 3258400-3259660 bp Feature: gene Location: 3259665-3260084 bp Ori: QIQ38356.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3259668-3260079 bp Feature: domain Description: PRK1 0276 Location: 3259668-3260079 bp Feature: gene Location: 3260163-3261647 bp Ori: QIQ38357.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3260565-3261255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3260565-3261 255 bp Feature: gene Location: 3261647-3261898 bp Feature: gene Location: 3262265-3262507 bp Ori: QIQ38359.1 Feature: domain Description: DinI Location: 3262316-3262496 bp Feature: domain Description: DinI Location: 326231 6-3262496 bp Feature: gene Location: 3610266-3611144 bp Ori: QIQ40482.1 Feature: domain Description: Phage_CI_repr Location: 3610293-3610476 bp Feature: domain Description: Phage_CI_repr Location: 361 0293-361 0476 bp Feature: domain Description: Phage_CI_repr Location: 3610605-3610797 bp Feature: domain Description: Phage_CI_repr Location: 361 0605-361 0797 bp Feature: domain Description: Phage_CI_C Location: 3610824-3611118 bp Feature: domain Description: Phage_CI_C Location: 361 0824-361 1 1 1 8 bp Feature: gene Location: 3611156-3612100 bp Feature: gene Location: 3612199-3613683 bp Ori: QIQ38680.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3612601-3613291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 2601 -361 3291 bp Feature: gene Location: 3613683-3613934 bp Feature: gene Location: 3614102-3615154 bp Ori: QIQ38682.1 Feature: domain Description: int Location: 3614105-3615104 bp Feature: domain Description: int Location: 361 41 05-361 51 04 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175), RVT-GII, umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), DinI (pfam06183), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)

Seq: CP039526.1 Klebsiella pneumoniae subsp. pneumoniae strain HB25-1 plasmid pHB25-1-vir, complete sequence (396373 bp)
Overview 1 RT 1: 80224-84129 bp Neighborhood of RT #1 [80224, 84737] RVT-GII HTH_28 rve Feature: gene Location: 80224-80538 bp Feature: gene Location: 80726-80977 bp Feature: gene Location: 80977-82461 bp Ori: QIQ40756.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81379-82069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81379-82 069 bp Feature: gene Location: 82673-83305 bp Feature: gene Location: 83334-84737 bp Ori: QIQ40757.1 Feature: domain Description: HTH_28 Location: 83382-83523 bp Feature: domain Description: HTH_2 8 Location: 83382 -8352 3 bp Feature: domain Description: rve Location: 83763-84129 bp Feature: domain Description: rve Location: 83763-8412 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518), rve (pfam00665)