myRT

myRT report for GCA_011764565.1_ASM1176456v1

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Seq: AP022871.1 Phytohabitans suffuscus NBRC 105367 DNA, complete genome (10148719 bp)
Overview 1 RT 1: 540878-544199 bp 2 RT 2: 1119554-1123961 bp 3 RT 3: 1158772-1164130 bp 4 RT 4: 2297487-2301921 bp Neighborhood of RT #1 [540878, 544573] PT-HINT RVT-GII YejR UbiE Neighborhood of RT #2 [1119554, 1124896] Phage_int_SAM_1 INT_RitC_C_like KOG4768 RVT-GII COG5635 Neighborhood of RT #3 [1158772, 1164135] COG3464 COG3464 RVT-GII GIIM COG3464 COG3464 Neighborhood of RT #4 [2297487, 2301921] HTH_33 RVT-GII GIIM DDE_Tnp_4 Feature: gene Location: 540878-541912 bp Ori: BCB83153.1 Feature: domain Description: PT-HINT Location: 541184-541577 bp Feature: domain Description: PT-HINT Location: 541 1 84-541 577 bp Feature: gene Location: 541952-542245 bp Feature: gene Location: 542395-542754 bp Ori: BCB83155.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542611-542710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54261 1 -54271 0 bp Feature: gene Location: 543193-543567 bp Ori: BCB83156.1 Feature: domain Description: YejR Location: 543196-543436 bp Feature: domain Description: YejR Location: 5431 96-543436 bp Feature: gene Location: 543749-544573 bp Ori: BCB83157.1 Feature: domain Description: UbiE Location: 543764-544199 bp Feature: domain Description: UbiE Location: 543764-5441 99 bp Feature: gene Location: 1119554-1120543 bp Ori: BCB83697.1 Feature: domain Description: Phage_int_SAM_1 Location: 1119590-1119836 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 1 1 9590-1 1 1 9836 bp Feature: domain Description: INT_RitC_C_like Location: 1119926-1120469 bp Feature: domain Description: INT_RitC_C_like Location: 1 1 1 9926-1 1 20469 bp Feature: gene Location: 1120655-1120909 bp Ori: BCB83698.1 Feature: domain Description: KOG4768 Location: 1120658-1120904 bp Feature: domain Description: KOG4768 Location: 1 1 20658-1 1 20904 bp Feature: gene Location: 1120798-1121388 bp Ori: BCB83699.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1120891-1121269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 20891 -1 1 21 269 bp Feature: gene Location: 1121370-1121555 bp Feature: gene Location: 1122245-1124896 bp Ori: BCB83701.1 Feature: domain Description: COG5635 Location: 1122929-1123961 bp Feature: domain Description: COG5635 Location: 1 1 22929-1 1 23961 bp Feature: gene Location: 1158772-1160025 bp Ori: BCB83727.1 Feature: domain Description: COG3464 Location: 1158856-1159099 bp Feature: domain Description: COG3464 Location: 1 1 58856-1 1 59099 bp Feature: domain Description: COG3464 Location: 1159276-1159891 bp Feature: domain Description: COG3464 Location: 1 1 59276-1 1 59891 bp Feature: gene Location: 1160118-1160564 bp Feature: gene Location: 1160586-1161851 bp Ori: BCB83729.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1160802-1161462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 60802-1 1 61 462 bp Feature: domain Description: GIIM Note: maturase Location: 1161555-1161759 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 61 555-1 1 61 759 bp Feature: gene Location: 1162228-1162590 bp Feature: gene Location: 1162558-1164135 bp Ori: BCB83731.1 Feature: domain Description: COG3464 Location: 1162630-1163299 bp Feature: domain Description: COG3464 Location: 1 1 62630-1 1 63299 bp Feature: domain Description: COG3464 Location: 1163800-1164130 bp Feature: domain Description: COG3464 Location: 1 1 63800-1 1 641 30 bp Feature: gene Location: 2297487-2298017 bp Ori: BCB84685.1 Feature: domain Description: HTH_33 Location: 2297538-2297709 bp Feature: domain Description: HTH_33 Location: 2297538-2297709 bp Feature: gene Location: 2298269-2298736 bp Feature: gene Location: 2298837-2300081 bp Ori: BCB84687.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2299053-2299704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2299053-2299704 bp Feature: domain Description: GIIM Note: maturase Location: 2299788-2300016 bp Feature: domain Description: GIIM Note: maturase Location: 2299788-230001 6 bp Feature: gene Location: 2300720-2301541 bp Ori: BCB84688.1 Feature: domain Description: DDE_Tnp_4 Location: 2301041-2301512 bp Feature: domain Description: DDE_Tnp_4 Location: 2301 041 -2301 51 2 bp Feature: gene Location: 2301661-2301921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PT-HINT (pfam07591), RVT-GII, YejR (COG0523), UbiE (COG2226), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), COG5635 (Predicted NTPase, NACHT family domain ), COG3464 (Transposase ), GIIM (pfam08388)
HTH_33 (pfam13592), DDE_Tnp_4 (pfam13359)