myRT

myRT report for GCA_011764625.1_ASM1176462v1

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Seq: AP022869.1 Halomonas meridiana Eplume2 DNA, complete genome (4118995 bp)
Overview 1 RT 1: 298943-306798 bp 2 RT 2: 1119914-1126264 bp 3 RT 3: 1376603-1382779 bp 4 RT 4: 1607196-1614607 bp 5 RT 5: 2406924-2413626 bp 6 RT 6: 3303814-3310342 bp 7 RT 7: 3547350-3551133 bp Neighborhood of RT #1 [298943, 306812] YkuD_like Alanine_zipper RVT-GII GIIM PRK10190 PRK10689 Neighborhood of RT #2 [1119914, 1126443] GalU PGM_like3 RVT-GII GIIM Porin_4 ZapB ProQ Neighborhood of RT #3 [1376603, 1382796] DDE_Tnp_1 TarH Tar RVT-GII GIIM CAD1 AraC_N AraC Neighborhood of RT #4 [1607196, 1614639] HAD_L2-DEX COG3666 DDE_Tnp_1 RVT-GII GIIM PRK07482 ALDH_F5_SSADH_GabD Neighborhood of RT #5 [2406924, 2413634] Usp Usp PRK06427 RVT-GII GIIM FcbT1 FcbT3 Neighborhood of RT #6 [3303814, 3310371] tgt queA RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 Neighborhood of RT #7 [3547350, 3551240] DDE_Tnp_1_4 TonB-siderophor RVT-GII GIIM LZ_Tnp_IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 298943-299413 bp Ori: BCB69930.1 Feature: domain Description: YkuD_like Location: 298946-299411 bp Feature: domain Description: YkuD_like Location: 298946-29941 1 bp Feature: gene Location: 299638-299901 bp Ori: BCB69931.1 Feature: domain Description: Alanine_zipper Location: 299719-299899 bp Feature: domain Description: Alanine_zipper Location: 29971 9-299899 bp Feature: gene Location: 300711-301988 bp Ori: BCB69932.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300924-301542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300924-301 542 bp Feature: domain Description: GIIM Note: maturase Location: 301590-301815 bp Feature: domain Description: GIIM Note: maturase Location: 301 590-301 81 5 bp Feature: gene Location: 302086-303219 bp Ori: BCB69933.1 Feature: domain Description: PRK10190 Location: 302287-302992 bp Feature: domain Description: PRK1 01 90 Location: 302287-302992 bp Feature: gene Location: 303318-306812 bp Ori: BCB69934.1 Gene: mfd Feature: domain Description: PRK10689 Location: 303414-306798 bp Feature: domain Description: PRK1 0689 Location: 30341 4-306798 bp Feature: gene Location: 1119914-1120768 bp Ori: BCB70687.1 Gene: galU Feature: domain Description: GalU Location: 1119920-1120748 bp Feature: domain Description: GalU Location: 1 1 1 9920-1 1 20748 bp Feature: gene Location: 1120900-1122483 bp Ori: BCB70688.1 Gene: pgm Feature: domain Description: PGM_like3 Location: 1120909-1122457 bp Feature: domain Description: PGM_like3 Location: 1 1 20909-1 1 22457 bp Feature: gene Location: 1122685-1123962 bp Ori: BCB70689.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1122898-1123516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 22898-1 1 2351 6 bp Feature: domain Description: GIIM Note: maturase Location: 1123564-1123789 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 23564-1 1 23789 bp Feature: gene Location: 1124771-1125490 bp Ori: BCB70690.1 Feature: domain Description: Porin_4 Location: 1124777-1125392 bp Feature: domain Description: Porin_4 Location: 1 1 24777-1 1 25392 bp Feature: gene Location: 1125739-1126443 bp Ori: BCB70691.1 Feature: domain Description: ZapB Location: 1125757-1125925 bp Feature: domain Description: ZapB Location: 1 1 25757-1 1 25925 bp Feature: domain Description: ProQ Location: 1125964-1126264 bp Feature: domain Description: ProQ Location: 1 1 25964-1 1 26264 bp Feature: gene Location: 1376603-1377799 bp Ori: BCB70942.1 Feature: domain Description: DDE_Tnp_1 Location: 1376927-1377578 bp Feature: domain Description: DDE_Tnp_1 Location: 1 376927-1 377578 bp Feature: gene Location: 1377706-1378542 bp Ori: BCB70943.1 Feature: domain Description: TarH Location: 1377712-1378126 bp Feature: domain Description: TarH Location: 1 37771 2-1 3781 26 bp Feature: domain Description: Tar Location: 1378147-1378420 bp Feature: domain Description: Tar Location: 1 3781 47-1 378420 bp Feature: gene Location: 1378733-1380121 bp Ori: BCB70944.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1379057-1379672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 379057-1 379672 bp Feature: domain Description: GIIM Note: maturase Location: 1379726-1379942 bp Feature: domain Description: GIIM Note: maturase Location: 1 379726-1 379942 bp Feature: gene Location: 1380644-1381705 bp Ori: BCB70945.1 Feature: domain Description: CAD1 Location: 1380662-1381676 bp Feature: domain Description: CAD1 Location: 1 380662-1 381 676 bp Feature: gene Location: 1381903-1382796 bp Ori: BCB70946.1 Feature: domain Description: AraC_N Location: 1381990-1382434 bp Feature: domain Description: AraC_N Location: 1 381 990-1 382434 bp Feature: domain Description: AraC Location: 1382476-1382779 bp Feature: domain Description: AraC Location: 1 382476-1 382779 bp Feature: gene Location: 1607196-1607873 bp Ori: BCB71158.1 Gene: dehII Feature: domain Description: HAD_L2-DEX Location: 1607208-1607859 bp Feature: domain Description: HAD_L2-DEX Location: 1 607208-1 607859 bp Feature: gene Location: 1608153-1609508 bp Ori: BCB71159.1 Feature: domain Description: COG3666 Location: 1608186-1608606 bp Feature: domain Description: COG3666 Location: 1 6081 86-1 608606 bp Feature: domain Description: DDE_Tnp_1 Location: 1608978-1609479 bp Feature: domain Description: DDE_Tnp_1 Location: 1 608978-1 609479 bp Feature: gene Location: 1609775-1610998 bp Ori: BCB71160.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1610099-1610717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 0099-1 61 071 7 bp Feature: domain Description: GIIM Note: maturase Location: 1610768-1610984 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 0768-1 61 0984 bp Feature: gene Location: 1611521-1612954 bp Ori: BCB71161.1 Feature: domain Description: PRK07482 Location: 1611533-1612904 bp Feature: domain Description: PRK07482 Location: 1 61 1 533-1 61 2904 bp Feature: gene Location: 1613143-1614639 bp Ori: BCB71162.1 Gene: gabD_1 Feature: domain Description: ALDH_F5_SSADH_GabD Location: 1613260-1614607 bp Feature: domain Description: ALDH_F5_SSADH_GabD Location: 1 61 3260-1 61 4607 bp Feature: gene Location: 2406924-2407769 bp Ori: BCB71932.1 Feature: domain Description: Usp Location: 2406927-2407326 bp Feature: domain Description: Usp Location: 2406927-2407326 bp Feature: domain Description: Usp Location: 2407356-2407761 bp Feature: domain Description: Usp Location: 2407356-2407761 bp Feature: gene Location: 2407890-2408720 bp Ori: BCB71933.1 Gene: thiD_1 Feature: domain Description: PRK06427 Location: 2407911-2408718 bp Feature: domain Description: PRK06427 Location: 240791 1 -240871 8 bp Feature: gene Location: 2408891-2410168 bp Ori: BCB71934.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2409104-2409722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24091 04-2409722 bp Feature: domain Description: GIIM Note: maturase Location: 2409770-2409995 bp Feature: domain Description: GIIM Note: maturase Location: 2409770-2409995 bp Feature: gene Location: 2410949-2412058 bp Ori: BCB71935.1 Feature: domain Description: FcbT1 Location: 2410991-2412029 bp Feature: domain Description: FcbT1 Location: 241 0991 -241 2029 bp Feature: gene Location: 2412231-2413634 bp Ori: BCB71936.1 Feature: domain Description: FcbT3 Location: 2412243-2413626 bp Feature: domain Description: FcbT3 Location: 241 2243-241 3626 bp Feature: gene Location: 3303814-3304959 bp Ori: BCB72795.1 Gene: tgt Feature: domain Description: tgt Location: 3303835-3304915 bp Feature: domain Description: tgt Location: 3303835-330491 5 bp Feature: gene Location: 3304996-3306027 bp Ori: BCB72796.1 Gene: queA Feature: domain Description: queA Location: 3304999-3306022 bp Feature: domain Description: queA Location: 3304999-3306022 bp Feature: gene Location: 3306993-3308270 bp Ori: BCB72797.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3307206-3307824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3307206-3307824 bp Feature: domain Description: GIIM Note: maturase Location: 3307872-3308097 bp Feature: domain Description: GIIM Note: maturase Location: 3307872-3308097 bp Feature: gene Location: 3308542-3308817 bp Ori: BCB72798.1 Feature: domain Description: DDE_Tnp_IS66 Location: 3308548-3308659 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3308548-3308659 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3308677-3308791 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3308677-3308791 bp Feature: gene Location: 3308956-3310371 bp Ori: BCB72799.1 Feature: domain Description: Tnp_DNA_bind Location: 3308968-3309139 bp Feature: domain Description: Tnp_DNA_bind Location: 3308968-33091 39 bp Feature: domain Description: DDE_Tnp_1 Location: 3309895-3310069 bp Feature: domain Description: DDE_Tnp_1 Location: 3309895-331 0069 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 3310222-3310342 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 331 0222-331 0342 bp Feature: gene Location: 3547350-3547754 bp Feature: gene Location: 3547638-3548561 bp Ori: BCB73026.1 Feature: domain Description: DDE_Tnp_1_4 Location: 3547641-3548307 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 3547641 -3548307 bp Feature: domain Description: TonB-siderophor Location: 3548310-3548556 bp Feature: domain Description: TonB-siderophor Location: 354831 0-3548556 bp Feature: gene Location: 3548450-3549289 bp Ori: BCB73027.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3548453-3549026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3548453-3549026 bp Feature: domain Description: GIIM Note: maturase Location: 3549077-3549215 bp Feature: domain Description: GIIM Note: maturase Location: 3549077-354921 5 bp Feature: gene Location: 3549419-3549688 bp Feature: gene Location: 3549678-3551240 bp Ori: BCB73029.1 Feature: domain Description: LZ_Tnp_IS66 Location: 3549702-3549879 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3549702-3549879 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3550143-3551004 bp Feature: domain Description: DDE_Tnp_IS66 Location: 35501 43-3551 004 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3551025-3551133 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3551 025-3551 1 33 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkuD_like (cl21614), Alanine_zipper (pfam11839), RVT-GII, GIIM (pfam08388), PRK10190 (L,D-transpeptidase; Provisional), PRK10689 (transcription-repair coupling factor; Provisional), GalU (COG1210), PGM_like3 (cd05801), Porin_4 (pfam13609), ZapB (pfam06005)
ProQ (smart00945), DDE_Tnp_1 (pfam01609), TarH (smart00319), Tar (COG0840), CAD1 (cd05283), AraC_N (pfam06719), AraC (COG2207), HAD_L2-DEX (cd02588), COG3666 (Transposase ), PRK07482 (hypothetical protein; Provisional)
ALDH_F5_SSADH_GabD (cd07103), Usp (pfam00582), PRK06427 (bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed), FcbT1 (COG4663), FcbT3 (COG4664), tgt (PRK00112), queA (TIGR00113), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), Tnp_DNA_bind (pfam14706)
Dimer_Tnp_Tn5 (pfam02281), DDE_Tnp_1_4 (pfam13701), TonB-siderophor (TIGR01783), LZ_Tnp_IS66 (pfam13007)