myRT

myRT report for GCA_011765405.1_ASM1176540v1

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Seq: CP050280.1 Klebsiella pneumoniae strain 9949 chromosome, complete genome (5494670 bp)
Overview 1 RT 1: 156094-161642 bp 2 RT 2: 507222-511375 bp 3 RT 3: 523558-533356 bp 4 RT 4: 600750-606163 bp 5 RT 5: 748686-753574 bp 6 RT 6: 830221-833922 bp 7 RT 7: 2004676-2011683 bp 8 RT 8: 2027936-2034417 bp 9 RT 9: 2486249-2490519 bp 10 RT 10: 2649791-2655450 bp Neighborhood of RT #1 [156094, 161668] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #2 [507222, 511380] DinI RVT-GII PRK10276 umuC Neighborhood of RT #3 [523558, 533356] AbiH RVT-GII PRK05318 RVT-GII PRK10597 Neighborhood of RT #4 [600750, 606165] DinI RVT-GII PRK10276 umuC Neighborhood of RT #5 [748686, 753794] PinE XerC RVT-GII PRK10276 umuC Neighborhood of RT #6 [830221, 833927] Laminin_G_3 RVT-GII PRK10597 Neighborhood of RT #7 [2004676, 2012213] DUF4917 AAA_15 RVT-Retrons STKc_PknB_like Neighborhood of RT #8 [2027936, 2034419] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #9 [2486249, 2490536] Terminase_2 RVT-GII DUF551 Neighborhood of RT #10 [2649791, 2655527] DinI RVT-GII Phage_GPA dam Feature: gene Location: 156094-156657 bp Ori: QIQ88426.1 Feature: domain Description: YbjK Location: 156100-156637 bp Feature: domain Description: YbjK Location: 1 561 00-1 56637 bp Feature: gene Location: 156780-157760 bp Ori: QIQ92271.1 Feature: domain Description: int Location: 156783-157710 bp Feature: domain Description: int Location: 1 56783-1 5771 0 bp Feature: gene Location: 158248-159735 bp Ori: QIQ88427.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158653-159343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 58653-1 59343 bp Feature: gene Location: 159834-160778 bp Feature: gene Location: 160790-161668 bp Ori: QIQ92272.1 Feature: domain Description: Phage_CI_repr Location: 160817-161000 bp Feature: domain Description: Phage_CI_repr Location: 1 6081 7-1 61 000 bp Feature: domain Description: Phage_CI_repr Location: 161129-161321 bp Feature: domain Description: Phage_CI_repr Location: 1 61 1 29-1 61 321 bp Feature: domain Description: Phage_CI_C Location: 161348-161642 bp Feature: domain Description: Phage_CI_C Location: 1 61 348-1 61 642 bp Feature: gene Location: 507222-507464 bp Feature: gene Location: 507464-507706 bp Ori: QIQ88672.1 Feature: domain Description: DinI Location: 507512-507695 bp Feature: domain Description: DinI Location: 50751 2-507695 bp Feature: gene Location: 508104-509591 bp Ori: QIQ88673.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 508509-509199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 508509-5091 99 bp Feature: gene Location: 509694-510112 bp Gene: umuD Feature: domain Description: PRK10276 Location: 509697-509922 bp Feature: domain Description: PRK1 0276 Location: 509697-509922 bp Feature: gene Location: 510115-511380 bp Ori: QIQ88674.1 Feature: domain Description: umuC Location: 510118-511375 bp Feature: domain Description: umuC Location: 51 01 1 8-51 1 375 bp Feature: gene Location: 523558-524949 bp Feature: gene Location: 525038-525907 bp Ori: QIQ92295.1 Feature: domain Description: AbiH Location: 525047-525815 bp Feature: domain Description: AbiH Location: 525047-52581 5 bp Feature: gene Location: 526644-528131 bp Ori: QIQ88686.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 527049-527739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 527049-527739 bp Feature: gene Location: 528124-528882 bp Feature: gene Location: 529056-530417 bp Ori: QIQ88687.1 Feature: domain Description: PRK05318 Location: 529080-530379 bp Feature: domain Description: PRK0531 8 Location: 529080-530379 bp Feature: gene Location: 531255-532742 bp Ori: QIQ88688.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 531660-532350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 531 660-532350 bp Feature: gene Location: 532821-533054 bp Ori: QIQ88689.1 Feature: domain Description: PRK10597 Location: 532824-533049 bp Feature: domain Description: PRK1 0597 Location: 532824-533049 bp Feature: gene Location: 533117-533356 bp Feature: gene Location: 600750-601885 bp Feature: gene Location: 602056-602298 bp Ori: QIQ88745.1 Feature: domain Description: DinI Location: 602107-602287 bp Feature: domain Description: DinI Location: 6021 07-602287 bp Feature: gene Location: 602913-604400 bp Ori: QIQ88746.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 603318-604008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60331 8-604008 bp Feature: gene Location: 604478-604897 bp Ori: QIQ88747.1 Gene: umuD Feature: domain Description: PRK10276 Location: 604481-604892 bp Feature: domain Description: PRK1 0276 Location: 604481 -604892 bp Feature: gene Location: 604900-606165 bp Ori: QIQ88748.1 Feature: domain Description: umuC Location: 604903-606163 bp Feature: domain Description: umuC Location: 604903-6061 63 bp Feature: gene Location: 748686-749147 bp Feature: domain Description: PinE Location: 748689-749139 bp Feature: domain Description: PinE Location: 748689-7491 39 bp Feature: gene Location: 749225-749647 bp Ori: QIQ88860.1 Feature: domain Description: XerC Location: 749261-749606 bp Feature: domain Description: XerC Location: 749261 -749606 bp Feature: gene Location: 750542-752029 bp Ori: QIQ88861.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 750947-751637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 750947-751 637 bp Feature: gene Location: 752109-752528 bp Ori: QIQ92312.1 Gene: umuD Feature: domain Description: PRK10276 Location: 752112-752523 bp Feature: domain Description: PRK1 0276 Location: 7521 1 2-752523 bp Feature: gene Location: 752530-753794 bp Feature: domain Description: umuC Location: 752533-753574 bp Feature: domain Description: umuC Location: 752533-753574 bp Feature: gene Location: 830221-830952 bp Ori: QIQ88930.1 Feature: domain Description: Laminin_G_3 Location: 830557-830896 bp Feature: domain Description: Laminin_G_3 Location: 830557-830896 bp Feature: gene Location: 830949-831158 bp Feature: gene Location: 831608-833095 bp Ori: QIQ88932.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 832013-832703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83201 3-832703 bp Feature: gene Location: 833172-833456 bp Feature: gene Location: 833679-833927 bp Ori: QIQ88933.1 Feature: domain Description: PRK10597 Location: 833682-833922 bp Feature: domain Description: PRK1 0597 Location: 833682-833922 bp Feature: gene Location: 2004676-2005695 bp Ori: QIQ89743.1 Feature: domain Description: DUF4917 Location: 2004736-2005660 bp Feature: domain Description: DUF491 7 Location: 2004736-2005660 bp Feature: gene Location: 2007090-2009336 bp Ori: QIQ89744.1 Feature: domain Description: AAA_15 Location: 2007093-2008101 bp Feature: domain Description: AAA_1 5 Location: 2007093-20081 01 bp Feature: gene Location: 2009451-2010551 bp Ori: QIQ89745.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2009634-2010162 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2009634-201 01 62 bp Feature: gene Location: 2010882-2010956 bp Feature: gene Location: 2011110-2012213 bp Ori: QIQ89746.1 Feature: domain Description: STKc_PknB_like Location: 2011242-2011683 bp Feature: domain Description: STKc_PknB_like Location: 201 1 242-201 1 683 bp Feature: gene Location: 2027936-2028994 bp Ori: QIQ89759.1 Feature: domain Description: YccC Location: 2027942-2028980 bp Feature: domain Description: YccC Location: 2027942-2028980 bp Feature: gene Location: 2029093-2029566 bp Ori: QIQ89760.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 2029096-2029555 bp Feature: domain Description: PRK1 001 6 Location: 2029096-2029555 bp Feature: gene Location: 2029648-2031135 bp Ori: QIQ89761.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2030053-2030743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2030053-2030743 bp Feature: gene Location: 2031651-2032814 bp Ori: QIQ89762.1 Gene: dacD Feature: domain Description: dacD Location: 2031654-2032809 bp Feature: domain Description: dacD Location: 2031 654-2032809 bp Feature: gene Location: 2032995-2034419 bp Ori: QIQ89763.1 Gene: sbcB Feature: domain Description: SbcB Location: 2033001-2034417 bp Feature: domain Description: SbcB Location: 2033001 -203441 7 bp Feature: gene Location: 2486249-2486833 bp Ori: QIQ90066.1 Feature: domain Description: Terminase_2 Location: 2486294-2486759 bp Feature: domain Description: Terminase_2 Location: 2486294-2486759 bp Feature: gene Location: 2486911-2487168 bp Feature: gene Location: 2487569-2489056 bp Ori: QIQ90068.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2487974-2488664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2487974-2488664 bp Feature: gene Location: 2489152-2489490 bp Feature: gene Location: 2489580-2490536 bp Ori: QIQ92414.1 Feature: domain Description: DUF551 Location: 2490321-2490519 bp Feature: domain Description: DUF551 Location: 2490321 -249051 9 bp Feature: gene Location: 2649791-2650024 bp Ori: QIQ90193.1 Feature: domain Description: DinI Location: 2649836-2650019 bp Feature: domain Description: DinI Location: 2649836-265001 9 bp Feature: gene Location: 2650036-2650224 bp Feature: gene Location: 2650331-2651818 bp Ori: QIQ90194.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2650736-2651426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2650736-2651 426 bp Feature: gene Location: 2652296-2654679 bp Feature: domain Description: Phage_GPA Location: 2652860-2653826 bp Feature: domain Description: Phage_GPA Location: 2652860-2653826 bp Feature: gene Location: 2654676-2655527 bp Ori: QIQ90195.1 Feature: domain Description: dam Location: 2654679-2655450 bp Feature: domain Description: dam Location: 2654679-2655450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), AbiH (pfam14253), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional)
PRK10597 (DNA damage-inducible protein I; Provisional), PinE (COG1961), XerC (COG4973), Laminin_G_3 (pfam13385), DUF4917 (pfam16263), AAA_15 (pfam13175), RVT-Retrons, STKc_PknB_like (cd14014), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC)
dacD (PRK11397), SbcB (COG2925), Terminase_2 (pfam03592), DUF551 (pfam04448), Phage_GPA (pfam05840), dam (TIGR00571)

Seq: CP050282.1 Klebsiella pneumoniae strain 9949 plasmid unnamed2, complete sequence (185429 bp)
Overview 1 RT 1: 32176-37682 bp 2 RT 2: 108959-112368 bp Neighborhood of RT #1 [32176, 37807] DUF3560 RVT_N RVT-GII GIIM HNHc DUF1380 Neighborhood of RT #2 [108959, 112501] StbA RVT-GII PRK10276 Feature: gene Location: 32176-33536 bp Feature: domain Description: DUF3560 Location: 32443-32800 bp Feature: domain Description: DUF3560 Location: 32 443-32 800 bp Feature: gene Location: 33588-33818 bp Feature: gene Location: 35216-36883 bp Ori: QIQ92720.1 Gene: ltrA Feature: domain Description: RVT_N Location: 35264-35501 bp Feature: domain Description: RVT_N Location: 352 64-35501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35552-36194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35552 -36194 bp Feature: domain Description: GIIM Note: maturase Location: 36245-36479 bp Feature: domain Description: GIIM Note: maturase Location: 362 45-36479 bp Feature: domain Description: HNHc Note: nucleases Location: 36689-36848 bp Feature: domain Description: HNHc Note: nucleases Location: 36689-36848 bp Feature: gene Location: 37197-37388 bp Feature: gene Location: 37385-37807 bp Ori: QIQ92722.1 Feature: domain Description: DUF1380 Location: 37388-37682 bp Feature: domain Description: DUF1380 Location: 37388-37682 bp Feature: gene Location: 108959-109930 bp Ori: QIQ92806.1 Feature: domain Description: StbA Location: 108962-109907 bp Feature: domain Description: StbA Location: 108962 -109907 bp Feature: gene Location: 110061-110185 bp Feature: gene Location: 110178-111665 bp Ori: QIQ92807.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110583-111273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110583-1112 73 bp Feature: gene Location: 111977-112093 bp Feature: gene Location: 112071-112501 bp Gene: umuD Feature: domain Description: PRK10276 Location: 112122-112368 bp Feature: domain Description: PRK102 76 Location: 112 12 2 -112 368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3560 (pfam12083), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), StbA (pfam06406), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP050284.1 Klebsiella pneumoniae strain 9949 plasmid unnamed4, complete sequence (16223 bp)
Overview 1 RT 1: 159-3179 bp 2 RT 2: 10071-15147 bp Neighborhood of RT #1 [159, 3181] RVT-GII tolA Neighborhood of RT #2 [10071, 15149] Cloacin_immun RVT-GII tolA Feature: gene Location: 159-1646 bp Ori: QIQ92967.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 564-1254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 564-1254 bp Feature: gene Location: 2291-2536 bp Feature: gene Location: 2810-3181 bp Ori: QIQ92969.1 Gene: tolA Feature: domain Description: tolA Location: 2918-3179 bp Feature: domain Description: tolA Location: 2918-3 179 bp Feature: gene Location: 10071-10328 bp Ori: QIQ92977.1 Feature: domain Description: Cloacin_immun Location: 10077-10314 bp Feature: domain Description: Cloacin_immun Location: 10077-103 14 bp Feature: gene Location: 10338-12022 bp Feature: gene Location: 12127-13614 bp Ori: QIQ92978.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12532-13222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1253 2-13 222 bp Feature: gene Location: 14259-14504 bp Feature: gene Location: 14778-15149 bp Ori: QIQ92980.1 Gene: tolA Feature: domain Description: tolA Location: 14886-15147 bp Feature: domain Description: tolA Location: 14886-15147 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, tolA (PRK09510), Cloacin_immun (pfam03513)

Seq: CP050283.1 Klebsiella pneumoniae strain 9949 plasmid unnamed3, complete sequence (114400 bp)
Overview 1 RT 1: 37025-42187 bp Neighborhood of RT #1 [37025, 42187] umuC PRK10276 RVT-GII DUF2913 Feature: gene Location: 37025-37804 bp Ori: QIQ92899.1 Feature: domain Description: umuC Location: 37028-37790 bp Feature: domain Description: umuC Location: 37028-37790 bp Feature: gene Location: 37804-38229 bp Ori: QIQ92900.1 Gene: umuD Feature: domain Description: PRK10276 Location: 37855-38215 bp Feature: domain Description: PRK10276 Location: 37855-38215 bp Feature: gene Location: 38306-39793 bp Ori: QIQ92901.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38711-39401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38711-394 01 bp Feature: gene Location: 40207-40821 bp Ori: QIQ92902.1 Feature: domain Description: DUF2913 Location: 40237-40723 bp Feature: domain Description: DUF2913 Location: 4 0237-4 0723 bp Feature: gene Location: 41727-42187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DUF2913 (pfam11140)