myRT

myRT report for GCA_011769865.1_ASM1176986v1

Download annotations/find similar RTs

Seq: CP050382.1 Escherichia coli strain 52148 chromosome, complete genome (4859628 bp)
Overview 1 RT 1: 1058644-1063352 bp 2 RT 2: 1364429-1370820 bp 3 RT 3: 2491595-2502154 bp 4 RT 4: 3245515-3251482 bp 5 RT 5: 4198853-4203750 bp 6 RT 6: 4658724-4663018 bp 7 RT 7: 4672664-4681465 bp Neighborhood of RT #1 [1058644, 1063354] YhcG InsE RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #2 [1364429, 1370846] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Neighborhood of RT #3 [2491595, 2502156] DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 PHA02517 RVT-GII GIIM InsE PRK10396 Neighborhood of RT #4 [3245515, 3251482] Peptidase_S74 APC_N_CC InsE RVT-GII GIIM PHA02517 Neighborhood of RT #5 [4198853, 4203807] zinc_ribbon_11 InsE RVT-GII GIIM PHA02517 SH3_2 Neighborhood of RT #6 [4658724, 4663020] PHA02517 RVT-GII GIIM InsE PRK09183 Neighborhood of RT #7 [4672664, 4681572] CE4_Ecf1_like_5s CE4_Ecf1_like_5s InsE RVT-GII GIIM PHA02517 Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 1058644-1059504 bp Ori: QIR59784.1 Feature: domain Description: YhcG Location: 1058803-1059274 bp Feature: domain Description: YhcG Location: 1 058803-1 059274 bp Feature: gene Location: 1059592-1060331 bp Feature: domain Description: InsE Location: 1059595-1059934 bp Feature: domain Description: InsE Location: 1 059595-1 059934 bp Feature: gene Location: 1061004-1062512 bp Ori: QIR59785.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1061262-1061994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 061 262-1 061 994 bp Feature: domain Description: GIIM Note: maturase Location: 1062069-1062267 bp Feature: domain Description: GIIM Note: maturase Location: 1 062069-1 062267 bp Feature: gene Location: 1062596-1063075 bp Feature: domain Description: PHA02517 Location: 1062599-1063073 bp Feature: domain Description: PHA0251 7 Location: 1 062599-1 063073 bp Feature: gene Location: 1063118-1063354 bp Feature: domain Description: DUF1016_N Location: 1063175-1063352 bp Feature: domain Description: DUF1 01 6_N Location: 1 0631 75-1 063352 bp Feature: gene Location: 1364429-1365484 bp Ori: QIR60061.1 Feature: domain Description: YesN Location: 1364432-1364822 bp Feature: domain Description: YesN Location: 1 364432-1 364822 bp Feature: domain Description: YesN Location: 1365164-1365461 bp Feature: domain Description: YesN Location: 1 3651 64-1 365461 bp Feature: gene Location: 1365501-1366730 bp Ori: QIR60062.1 Feature: domain Description: YesM Location: 1365981-1366722 bp Feature: domain Description: YesM Location: 1 365981 -1 366722 bp Feature: gene Location: 1367313-1367834 bp Ori: QIR60063.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1367319-1367601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36731 9-1 367601 bp Feature: domain Description: GIIM Note: maturase Location: 1367649-1367829 bp Feature: domain Description: GIIM Note: maturase Location: 1 367649-1 367829 bp Feature: gene Location: 1368010-1368401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1368340-1368400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 368340-1 368400 bp Feature: gene Location: 1368887-1369792 bp Feature: gene Location: 1369929-1370846 bp Ori: QIR60065.1 Feature: domain Description: PFLE_PFLC Location: 1369965-1370820 bp Feature: domain Description: PFLE_PFLC Location: 1 369965-1 370820 bp Feature: gene Location: 2491595-2497330 bp Ori: QIR60995.1 Feature: domain Description: DUF4011 Location: 2491685-2492519 bp Feature: domain Description: DUF401 1 Location: 2491 685-249251 9 bp Feature: domain Description: DEXXQc_SF1 Location: 2492876-2495978 bp Feature: domain Description: DEXXQc_SF1 Location: 2492876-2495978 bp Feature: domain Description: SF1_C_Upf1 Location: 2495987-2496515 bp Feature: domain Description: SF1 _C_Upf1 Location: 2495987-249651 5 bp Feature: domain Description: MTES_1575 Location: 2496644-2496935 bp Feature: domain Description: MTES_1 575 Location: 2496644-2496935 bp Feature: gene Location: 2497551-2498009 bp Feature: domain Description: PHA02517 Location: 2497554-2498001 bp Feature: domain Description: PHA0251 7 Location: 2497554-2498001 bp Feature: gene Location: 2498090-2499598 bp Ori: QIR60996.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2498348-2499080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2498348-2499080 bp Feature: domain Description: GIIM Note: maturase Location: 2499155-2499353 bp Feature: domain Description: GIIM Note: maturase Location: 24991 55-2499353 bp Feature: gene Location: 2500271-2500956 bp Feature: domain Description: InsE Location: 2500283-2500547 bp Feature: domain Description: InsE Location: 2500283-2500547 bp Feature: gene Location: 2501491-2502156 bp Ori: QIR60997.1 Gene: yecA Feature: domain Description: PRK10396 Location: 2501494-2502154 bp Feature: domain Description: PRK1 0396 Location: 2501 494-25021 54 bp Feature: gene Location: 3245515-3246045 bp Ori: QIR63171.1 Feature: domain Description: Peptidase_S74 Location: 3245614-3245761 bp Feature: domain Description: Peptidase_S74 Location: 324561 4-3245761 bp Feature: domain Description: APC_N_CC Location: 3245914-3246037 bp Feature: domain Description: APC_N_CC Location: 324591 4-3246037 bp Feature: gene Location: 3246047-3246786 bp Feature: domain Description: InsE Location: 3246050-3246389 bp Feature: domain Description: InsE Location: 3246050-3246389 bp Feature: gene Location: 3247459-3248967 bp Ori: QIR61635.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3247717-3248449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 324771 7-3248449 bp Feature: domain Description: GIIM Note: maturase Location: 3248524-3248722 bp Feature: domain Description: GIIM Note: maturase Location: 3248524-3248722 bp Feature: gene Location: 3249051-3249530 bp Feature: domain Description: PHA02517 Location: 3249054-3249528 bp Feature: domain Description: PHA0251 7 Location: 3249054-3249528 bp Feature: gene Location: 3249572-3251482 bp Feature: gene Location: 4198853-4199278 bp Ori: QIR62451.1 Feature: domain Description: zinc_ribbon_11 Location: 4198895-4199213 bp Feature: domain Description: zinc_ribbon_1 1 Location: 41 98895-41 9921 3 bp Feature: gene Location: 4199999-4200738 bp Feature: domain Description: InsE Location: 4200002-4200338 bp Feature: domain Description: InsE Location: 4200002-4200338 bp Feature: gene Location: 4201411-4202919 bp Ori: QIR62452.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4201669-4202401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4201 669-4202401 bp Feature: domain Description: GIIM Note: maturase Location: 4202476-4202674 bp Feature: domain Description: GIIM Note: maturase Location: 4202476-4202674 bp Feature: gene Location: 4203009-4203482 bp Feature: domain Description: PHA02517 Location: 4203015-4203480 bp Feature: domain Description: PHA0251 7 Location: 420301 5-4203480 bp Feature: gene Location: 4203558-4203807 bp Feature: domain Description: SH3_2 Location: 4203633-4203750 bp Feature: domain Description: SH3_2 Location: 4203633-4203750 bp Feature: gene Location: 4658724-4658981 bp Feature: gene Location: 4659064-4659551 bp Feature: domain Description: PHA02517 Location: 4659067-4659238 bp Feature: domain Description: PHA0251 7 Location: 4659067-4659238 bp Feature: gene Location: 4659632-4661140 bp Ori: QIR62845.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4659890-4660622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4659890-4660622 bp Feature: domain Description: GIIM Note: maturase Location: 4660697-4660895 bp Feature: domain Description: GIIM Note: maturase Location: 4660697-4660895 bp Feature: gene Location: 4661813-4662552 bp Feature: domain Description: InsE Location: 4661816-4662155 bp Feature: domain Description: InsE Location: 4661 81 6-46621 55 bp Feature: gene Location: 4662631-4663020 bp Ori: QIR63231.1 Feature: domain Description: PRK09183 Location: 4662652-4663018 bp Feature: domain Description: PRK091 83 Location: 4662652-466301 8 bp Feature: gene Location: 4672664-4673506 bp Ori: QIR63232.1 Feature: domain Description: CE4_Ecf1_like_5s Location: 4672763-4673159 bp Feature: domain Description: CE4_Ecf1 _like_5s Location: 4672763-46731 59 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 4673165-4673444 bp Feature: domain Description: CE4_Ecf1 _like_5s Location: 46731 65-4673444 bp Feature: gene Location: 4673692-4674409 bp Feature: domain Description: InsE Location: 4673731-4673980 bp Feature: domain Description: InsE Location: 4673731 -4673980 bp Feature: gene Location: 4675082-4676590 bp Ori: QIR62854.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4675340-4676072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4675340-4676072 bp Feature: domain Description: GIIM Note: maturase Location: 4676147-4676345 bp Feature: domain Description: GIIM Note: maturase Location: 46761 47-4676345 bp Feature: gene Location: 4676674-4677153 bp Feature: domain Description: PHA02517 Location: 4676677-4677151 bp Feature: domain Description: PHA0251 7 Location: 4676677-46771 51 bp Feature: gene Location: 4677195-4678297 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4677204-4677456 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4677204-4677456 bp Feature: gene Location: 4678752-4679684 bp Ori: QIR62855.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4678854-4679448 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4678854-4679448 bp Feature: gene Location: 4679686-4680654 bp Feature: gene Location: 4681300-4681572 bp Ori: QIR62856.1 Feature: domain Description: PRK09678 Location: 4681309-4681465 bp Feature: domain Description: PRK09678 Location: 4681 309-4681 465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhcG (COG4804), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF1016_N (pfam17761), YesN (COG4753), YesM (COG2972), PFLE_PFLC (TIGR02494), DUF4011 (pfam13195)
DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), PRK10396 (hypothetical protein; Provisional), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689), zinc_ribbon_11 (pfam11682), SH3_2 (pfam07653), PRK09183 (transposase/IS protein; Provisional), CE4_Ecf1_like_5s (cd10969)
Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)