myRT

myRT report for GCA_011801165.1_ASM1180116v1

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Seq: CP046173.1 Nocardia terpenica strain AUSMDU00012715 chromosome, complete genome (9306871 bp)
Overview 1 RT 1: 5920371-5928013 bp 2 RT 2: 8677770-8683348 bp 3 RT 3: 8818250-8824970 bp 4 RT 4: 8922654-8934084 bp Neighborhood of RT #1 [5920371, 5928013] RDD RVT-GII GIIM Neighborhood of RT #2 [8677770, 8683455] Tra8 Tra8 Tra8 RVT-GII GIIM INT_Rci_Hp1_C HTH_26 Neighborhood of RT #3 [8818250, 8825260] Terpene_cyclase_nonplant_C1 DUF772 RVT-GII GIIM xerC Neighborhood of RT #4 [8922654, 8934200] DDE_5 RVT-GII GIIM HTH_33 HTH_31 RVT-GII GIIM DUF772 COG3547 Feature: gene Location: 5920371-5921012 bp Feature: gene Location: 5921262-5922176 bp Ori: QIS21405.1 Feature: domain Description: RDD Location: 5921736-5922156 bp Feature: domain Description: RDD Location: 5921 736-59221 56 bp Feature: gene Location: 5923360-5924790 bp Ori: QIS21406.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5923681-5924365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5923681 -5924365 bp Feature: domain Description: GIIM Note: maturase Location: 5924440-5924650 bp Feature: domain Description: GIIM Note: maturase Location: 5924440-5924650 bp Feature: gene Location: 5924978-5926231 bp Feature: gene Location: 5927660-5928013 bp Feature: gene Location: 8677770-8679170 bp Feature: domain Description: Tra8 Location: 8678004-8678268 bp Feature: domain Description: Tra8 Location: 8678004-8678268 bp Feature: domain Description: Tra8 Location: 8678373-8678637 bp Feature: domain Description: Tra8 Location: 8678373-8678637 bp Feature: domain Description: Tra8 Location: 8678982-8679141 bp Feature: domain Description: Tra8 Location: 8678982-86791 41 bp Feature: gene Location: 8679928-8681358 bp Ori: QIS24735.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8680249-8680936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8680249-8680936 bp Feature: domain Description: GIIM Note: maturase Location: 8681008-8681233 bp Feature: domain Description: GIIM Note: maturase Location: 8681 008-8681 233 bp Feature: gene Location: 8681531-8683135 bp Ori: QIS23418.1 Feature: domain Description: INT_Rci_Hp1_C Location: 8682647-8682881 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 8682647-8682881 bp Feature: gene Location: 8683132-8683455 bp Ori: QIS23419.1 Feature: domain Description: HTH_26 Location: 8683144-8683348 bp Feature: domain Description: HTH_26 Location: 86831 44-8683348 bp Feature: gene Location: 8818250-8819212 bp Ori: QIS23503.1 Feature: domain Description: Terpene_cyclase_nonplant_C1 Location: 8818640-8819144 bp Feature: domain Description: Terpene_cyclase_nonplant_C1 Location: 881 8640-881 91 44 bp Feature: gene Location: 8819682-8819960 bp Feature: domain Description: DUF772 Location: 8819841-8819961 bp Feature: domain Description: DUF772 Location: 881 9841 -881 9961 bp Feature: gene Location: 8820563-8821993 bp Ori: QIS23504.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8820884-8821568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8820884-8821 568 bp Feature: domain Description: GIIM Note: maturase Location: 8821643-8821868 bp Feature: domain Description: GIIM Note: maturase Location: 8821 643-8821 868 bp Feature: gene Location: 8822126-8823548 bp Feature: gene Location: 8823980-8825260 bp Ori: QIS23505.1 Feature: domain Description: xerC Location: 8824178-8824970 bp Feature: domain Description: xerC Location: 88241 78-8824970 bp Feature: gene Location: 8922654-8922923 bp Feature: gene Location: 8923261-8924698 bp Feature: domain Description: DDE_5 Location: 8923327-8923678 bp Feature: domain Description: DDE_5 Location: 8923327-8923678 bp Feature: gene Location: 8924708-8926183 bp Ori: QIS23561.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8924858-8925440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8924858-8925440 bp Feature: domain Description: GIIM Note: maturase Location: 8925491-8925725 bp Feature: domain Description: GIIM Note: maturase Location: 8925491 -8925725 bp Feature: gene Location: 8926728-8927100 bp Feature: domain Description: HTH_33 Location: 8926941-8927010 bp Feature: domain Description: HTH_33 Location: 8926941 -892701 0 bp Feature: gene Location: 8927160-8928509 bp Ori: QIS23562.1 Feature: domain Description: HTH_31 Location: 8927322-8927487 bp Feature: domain Description: HTH_31 Location: 8927322-8927487 bp Feature: gene Location: 8928514-8928915 bp Feature: gene Location: 8928958-8930380 bp Feature: gene Location: 8930513-8931942 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8930834-8931518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8930834-8931 51 8 bp Feature: domain Description: GIIM Note: maturase Location: 8931593-8931818 bp Feature: domain Description: GIIM Note: maturase Location: 8931 593-8931 81 8 bp Feature: gene Location: 8932545-8932823 bp Feature: domain Description: DUF772 Location: 8932704-8932824 bp Feature: domain Description: DUF772 Location: 8932704-8932824 bp Feature: gene Location: 8933157-8934200 bp Ori: QIS23564.1 Feature: domain Description: COG3547 Location: 8933163-8934084 bp Feature: domain Description: COG3547 Location: 89331 63-8934084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RDD (pfam06271), RVT-GII, GIIM (pfam08388), Tra8 (COG2826), INT_Rci_Hp1_C (cd00796), HTH_26 (pfam13443), Terpene_cyclase_nonplant_C1 (cd00687), DUF772 (pfam05598), xerC (PRK01287), DDE_5 (pfam13546)
HTH_33 (pfam13592), HTH_31 (pfam13560), COG3547 (Transposase )