myRT

myRT report for GCA_012044895.1_ASM1204489v1

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Seq: CP050695.1 Natrialbaceae archaeon XQ-INN 246 strain 2447 chromosome, complete genome (3972634 bp)
Overview 1 RT 1: 525044-532145 bp 2 RT 2: 544655-551811 bp 3 RT 3: 1188498-1201028 bp 4 RT 4: 1392427-1397587 bp 5 RT 5: 2414495-2420382 bp 6 RT 6: 2570681-2574580 bp 7 RT 7: 2643052-2647235 bp 8 RT 8: 2656532-2662551 bp 9 RT 9: 3347373-3351147 bp 10 RT 10: 3814453-3822269 bp 11 RT 11: 3944718-3951631 bp Neighborhood of RT #1 [525044, 532162] FACL_FadD13-like ORF6N RVT-GII group_II_RT_mat PRK00911 AFG1_ATPase Neighborhood of RT #2 [544655, 551834] RaiA fadE RVT-GII RVT-GII ViuB PRK07627 Neighborhood of RT #3 [1188498, 1201030] PRK10702 PRK12405 RVT-GII PRK01908 rnfD PRK05035 PRK05113 RVT-GII PRK05151 metG Neighborhood of RT #4 [1392427, 1397637] FMN_red resist_ArsH RVT-GII RVT-GII PRK05790 SlpA Neighborhood of RT #5 [2414495, 2420912] DUF924 peroxid_rel RVT-GII group_II_RT_mat group_II_RT_mat PldB Neighborhood of RT #6 [2570681, 2574600] COG1569 PhdYeFM_antitox RVT-GII Phd PIN_VapC-like Neighborhood of RT #7 [2643052, 2647237] PIN_VapC4-5_FitB-like Phd RVT-GII RVT-GII RfaH PRK10348 Neighborhood of RT #8 [2656532, 2662613] DctM DctQ RVT-GII PRK06249 bass Neighborhood of RT #9 [3347373, 3351152] HTH_XRE RelE_StbE RVT-GII antidote_HigA HigB Neighborhood of RT #10 [3814453, 3822343] AcrR Hydrolase_4 RVT-GII RVT-GII PRK09039 PRK09038 Smc Neighborhood of RT #11 [3944718, 3951693] OMP_w_GlyGly YgdH RVT-GII uvrD PRK11151 Feature: gene Location: 525044-526591 bp Ori: QIT54167.1 Feature: domain Description: FACL_FadD13-like Location: 525068-526556 bp Feature: domain Description: FACL_FadD1 3-like Location: 525068-526556 bp Feature: gene Location: 526689-527001 bp Feature: domain Description: ORF6N Location: 526755-526998 bp Feature: domain Description: ORF6N Location: 526755-526998 bp Feature: gene Location: 527705-529006 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 527987-528137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 527987-5281 37 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 528578-528920 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 528578-528920 bp Feature: gene Location: 529195-530883 bp Ori: QIT54168.1 Gene: ilvD Feature: domain Description: PRK00911 Location: 529213-530866 bp Feature: domain Description: PRK0091 1 Location: 52921 3-530866 bp Feature: gene Location: 531053-532162 bp Ori: QIT54169.1 Feature: domain Description: AFG1_ATPase Location: 531056-532145 bp Feature: domain Description: AFG1 _ATPase Location: 531 056-5321 45 bp Feature: gene Location: 544655-544969 bp Ori: QIT54184.1 Feature: domain Description: RaiA Location: 544679-544943 bp Feature: domain Description: RaiA Location: 544679-544943 bp Feature: gene Location: 545126-547384 bp Ori: QIT54185.1 Feature: domain Description: fadE Location: 545141-547343 bp Feature: domain Description: fadE Location: 5451 41 -547343 bp Feature: gene Location: 548275-549575 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 548557-548707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 548557-548707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 548914-549232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54891 4-549232 bp Feature: gene Location: 549865-550542 bp Ori: QIT54186.1 Feature: domain Description: ViuB Location: 550072-550216 bp Feature: domain Description: ViuB Location: 550072-55021 6 bp Feature: gene Location: 550539-551834 bp Ori: QIT54187.1 Feature: domain Description: PRK07627 Location: 550554-551811 bp Feature: domain Description: PRK07627 Location: 550554-551 81 1 bp Feature: gene Location: 1188498-1189133 bp Ori: QIT54724.1 Gene: nth Feature: domain Description: PRK10702 Location: 1188501-1189128 bp Feature: domain Description: PRK1 0702 Location: 1 1 88501 -1 1 891 28 bp Feature: gene Location: 1189168-1189866 bp Ori: QIT54725.1 Feature: domain Description: PRK12405 Location: 1189183-1189825 bp Feature: domain Description: PRK1 2405 Location: 1 1 891 83-1 1 89825 bp Feature: gene Location: 1190528-1191830 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1190810-1191182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 9081 0-1 1 91 1 82 bp Feature: gene Location: 1191999-1192616 bp Ori: QIT57139.1 Gene: rsxG Feature: domain Description: PRK01908 Location: 1192017-1192587 bp Feature: domain Description: PRK01 908 Location: 1 1 9201 7-1 1 92587 bp Feature: gene Location: 1192643-1193683 bp Ori: QIT54726.1 Gene: rsxD Feature: domain Description: rnfD Location: 1192667-1193666 bp Feature: domain Description: rnfD Location: 1 1 92667-1 1 93666 bp Feature: gene Location: 1193680-1195236 bp Ori: QIT54727.1 Gene: rsxC Feature: domain Description: PRK05035 Location: 1193692-1195213 bp Feature: domain Description: PRK05035 Location: 1 1 93692-1 1 9521 3 bp Feature: gene Location: 1195247-1195804 bp Ori: QIT54728.1 Gene: rsxB Feature: domain Description: PRK05113 Location: 1195253-1195775 bp Feature: domain Description: PRK051 1 3 Location: 1 1 95253-1 1 95775 bp Feature: gene Location: 1196822-1198124 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1197104-1197476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 971 04-1 1 97476 bp Feature: gene Location: 1198247-1198828 bp Ori: QIT54729.1 Gene: rsxA Feature: domain Description: PRK05151 Location: 1198250-1198823 bp Feature: domain Description: PRK051 51 Location: 1 1 98250-1 1 98823 bp Feature: gene Location: 1199006-1201030 bp Ori: QIT54730.1 Gene: metG Feature: domain Description: metG Location: 1199015-1201028 bp Feature: domain Description: metG Location: 1 1 9901 5-1 201 028 bp Feature: gene Location: 1392427-1393086 bp Ori: QIT57154.1 Feature: domain Description: FMN_red Location: 1392433-1392874 bp Feature: domain Description: FMN_red Location: 1 392433-1 392874 bp Feature: gene Location: 1393124-1393828 bp Ori: QIT54912.1 Gene: arsH Feature: domain Description: resist_ArsH Location: 1393139-1393787 bp Feature: domain Description: resist_ArsH Location: 1 3931 39-1 393787 bp Feature: gene Location: 1394442-1395743 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1394724-1394874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 394724-1 394874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1395081-1395399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 395081 -1 395399 bp Feature: gene Location: 1395857-1397038 bp Ori: QIT54913.1 Feature: domain Description: PRK05790 Location: 1395866-1397033 bp Feature: domain Description: PRK05790 Location: 1 395866-1 397033 bp Feature: gene Location: 1397137-1397637 bp Ori: QIT54914.1 Feature: domain Description: SlpA Location: 1397140-1397587 bp Feature: domain Description: SlpA Location: 1 3971 40-1 397587 bp Feature: gene Location: 2414495-2415094 bp Ori: QIT55747.1 Feature: domain Description: DUF924 Location: 2414516-2415083 bp Feature: domain Description: DUF924 Location: 241 451 6-241 5083 bp Feature: gene Location: 2415181-2415750 bp Ori: QIT55748.1 Feature: domain Description: peroxid_rel Location: 2415202-2415730 bp Feature: domain Description: peroxid_rel Location: 241 5202-241 5730 bp Feature: gene Location: 2415926-2417226 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2416208-2416580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 6208-241 6580 bp Feature: gene Location: 2417916-2419214 bp Gene: ltrA Feature: domain Description: group_II_RT_mat Note: maturase Location: 2418036-2418159 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 241 8036-241 81 59 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2418939-2419128 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 241 8939-241 91 28 bp Feature: gene Location: 2419863-2420912 bp Ori: QIT55749.1 Feature: domain Description: PldB Location: 2420097-2420382 bp Feature: domain Description: PldB Location: 2420097-2420382 bp Feature: gene Location: 2570681-2571112 bp Ori: QIT55872.1 Feature: domain Description: COG1569 Location: 2570705-2571089 bp Feature: domain Description: COG1 569 Location: 2570705-2571 089 bp Feature: gene Location: 2571105-2571353 bp Ori: QIT55873.1 Feature: domain Description: PhdYeFM_antitox Location: 2571108-2571252 bp Feature: domain Description: PhdYeFM_antitox Location: 2571 1 08-2571 252 bp Feature: gene Location: 2571844-2573146 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2572126-2572804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25721 26-2572804 bp Feature: gene Location: 2573921-2574163 bp Ori: QIT55874.1 Feature: domain Description: Phd Location: 2573924-2574050 bp Feature: domain Description: Phd Location: 2573924-2574050 bp Feature: gene Location: 2574154-2574600 bp Ori: QIT55875.1 Feature: domain Description: PIN_VapC-like Location: 2574205-2574580 bp Feature: domain Description: PIN_VapC-like Location: 2574205-2574580 bp Feature: gene Location: 2643052-2643441 bp Ori: QIT57254.1 Feature: domain Description: PIN_VapC4-5_FitB-like Location: 2643058-2643412 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 2643058-264341 2 bp Feature: gene Location: 2643441-2643683 bp Ori: QIT55945.1 Feature: domain Description: Phd Location: 2643444-2643585 bp Feature: domain Description: Phd Location: 2643444-2643585 bp Feature: gene Location: 2644016-2645317 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2644298-2644448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2644298-2644448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2644655-2644973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2644655-2644973 bp Feature: gene Location: 2645951-2646454 bp Ori: QIT55946.1 Gene: rfaH Feature: domain Description: RfaH Location: 2645963-2646437 bp Feature: domain Description: RfaH Location: 2645963-2646437 bp Feature: gene Location: 2646851-2647237 bp Ori: QIT55947.1 Feature: domain Description: PRK10348 Location: 2646863-2647235 bp Feature: domain Description: PRK1 0348 Location: 2646863-2647235 bp Feature: gene Location: 2656532-2657083 bp Ori: QIT57256.1 Feature: domain Description: DctM Location: 2656538-2657018 bp Feature: domain Description: DctM Location: 2656538-265701 8 bp Feature: gene Location: 2657131-2658417 bp Ori: QIT55958.1 Feature: domain Description: DctQ Location: 2657272-2658406 bp Feature: domain Description: DctQ Location: 2657272-2658406 bp Feature: gene Location: 2658625-2659929 bp Ori: QIT55959.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2658907-2659585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2658907-2659585 bp Feature: gene Location: 2660666-2661607 bp Ori: QIT55960.1 Feature: domain Description: PRK06249 Location: 2660675-2661587 bp Feature: domain Description: PRK06249 Location: 2660675-2661 587 bp Feature: gene Location: 2661711-2662613 bp Ori: QIT55961.1 Feature: domain Description: bass Location: 2661732-2662551 bp Feature: domain Description: bass Location: 2661 732-2662551 bp Feature: gene Location: 3347373-3347633 bp Ori: QIT56530.1 Feature: domain Description: HTH_XRE Location: 3347421-3347592 bp Feature: domain Description: HTH_XRE Location: 3347421 -3347592 bp Feature: gene Location: 3347635-3347916 bp Feature: domain Description: RelE_StbE Location: 3347749-3347890 bp Feature: domain Description: RelE_StbE Location: 3347749-3347890 bp Feature: gene Location: 3348598-3349900 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3348880-3349558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3348880-3349558 bp Feature: gene Location: 3350561-3350854 bp Ori: QIT56531.1 Feature: domain Description: antidote_HigA Location: 3350576-3350804 bp Feature: domain Description: antidote_HigA Location: 3350576-3350804 bp Feature: gene Location: 3350871-3351152 bp Ori: QIT56532.1 Feature: domain Description: HigB Location: 3350874-3351147 bp Feature: domain Description: HigB Location: 3350874-3351 1 47 bp Feature: gene Location: 3814453-3815121 bp Ori: QIT56931.1 Feature: domain Description: AcrR Location: 3814465-3814948 bp Feature: domain Description: AcrR Location: 381 4465-381 4948 bp Feature: gene Location: 3815220-3815720 bp Ori: QIT56932.1 Feature: domain Description: Hydrolase_4 Location: 3815385-3815670 bp Feature: domain Description: Hydrolase_4 Location: 381 5385-381 5670 bp Feature: gene Location: 3815946-3817250 bp Ori: QIT56933.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3816228-3816906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381 6228-381 6906 bp Feature: gene Location: 3817939-3819243 bp Ori: QIT56934.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3818221-3818899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381 8221 -381 8899 bp Feature: gene Location: 3819898-3821088 bp Ori: QIT57350.1 Feature: domain Description: PRK09039 Location: 3819901-3820426 bp Feature: domain Description: PRK09039 Location: 381 9901 -3820426 bp Feature: domain Description: PRK09038 Location: 3820585-3821077 bp Feature: domain Description: PRK09038 Location: 3820585-3821 077 bp Feature: gene Location: 3821195-3822343 bp Ori: QIT56935.1 Feature: domain Description: Smc Location: 3821945-3822269 bp Feature: domain Description: Smc Location: 3821 945-3822269 bp Feature: gene Location: 3944718-3945482 bp Ori: QIT57030.1 Feature: domain Description: OMP_w_GlyGly Location: 3944748-3945480 bp Feature: domain Description: OMP_w_GlyGly Location: 3944748-3945480 bp Feature: gene Location: 3945621-3946340 bp Ori: QIT57359.1 Feature: domain Description: YgdH Location: 3945708-3946290 bp Feature: domain Description: YgdH Location: 3945708-3946290 bp Feature: gene Location: 3946501-3947801 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3946783-3947155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3946783-39471 55 bp Feature: gene Location: 3948570-3950744 bp Ori: QIT57031.1 Gene: uvrD Feature: domain Description: uvrD Location: 3948573-3950739 bp Feature: domain Description: uvrD Location: 3948573-3950739 bp Feature: gene Location: 3950764-3951693 bp Ori: QIT57032.1 Feature: domain Description: PRK11151 Location: 3950767-3951631 bp Feature: domain Description: PRK1 1 1 51 Location: 3950767-3951 631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FACL_FadD13-like (cd17631), ORF6N (pfam10543), RVT-GII, group_II_RT_mat (TIGR04416), PRK00911 (dihydroxy-acid dehydratase; Provisional), AFG1_ATPase (pfam03969), RaiA (COG1544), fadE (PRK09463), ViuB (COG2375), PRK07627 (dihydroorotase; Provisional)
PRK10702 (endonuclease III; Provisional), PRK12405 (electron transport complex RsxE subunit; Provisional), PRK01908 (electron transport complex protein RnfG; Validated), rnfD (TIGR01946), PRK05035 (electron transport complex protein RnfC; Provisional), PRK05113 (electron transport complex protein RnfB; Provisional), PRK05151 (electron transport complex protein RsxA; Provisional), metG (TIGR00398), FMN_red (pfam03358), resist_ArsH (TIGR02690)
PRK05790 (putative acyltransferase; Provisional), SlpA (COG1047), DUF924 (pfam06041), peroxid_rel (TIGR01926), PldB (COG2267), COG1569 (Predicted nucleic acid-binding protein, contains PIN domain ), PhdYeFM_antitox (pfam02604), Phd (COG4118), PIN_VapC-like (cd18715), PIN_VapC4-5_FitB-like (cd18754)
RfaH (TIGR01955), PRK10348 (ribosome-associated heat shock protein Hsp15; Provisional), DctM (pfam06808), DctQ (pfam04290), PRK06249 (putative 2-dehydropantoate 2-reductase), bass (TIGR00841), HTH_XRE (smart00530), RelE_StbE (TIGR02385), antidote_HigA (TIGR02607), HigB (COG4680)
AcrR (COG1309), Hydrolase_4 (pfam12146), PRK09039 (peptidoglycan -binding protein), PRK09038 (flagellar motor protein MotD; Reviewed), Smc (COG1196), OMP_w_GlyGly (TIGR04219), YgdH (COG1611), uvrD (TIGR01075), PRK11151 (DNA-binding transcriptional regulator OxyR; Provisional)