myRT

myRT report for GCA_012049605.1_ASM1204960v1

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Seq: CP050747.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST53 plasmid pST53-2, complete sequence (88006 bp)
Overview 1 RT 1: 48860-53294 bp Neighborhood of RT #1 [48860, 53416] DUF905 PRK13732 RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 48860-49093 bp Ori: QIT67162.1 Feature: domain Description: DUF905 Location: 48890-49088 bp Feature: domain Description: DUF905 Location: 48890-49088 bp Feature: gene Location: 49151-49678 bp Ori: QIT67163.1 Feature: domain Description: PRK13732 Location: 49154-49676 bp Feature: domain Description: PRK1 3732 Location: 491 54-49676 bp Feature: gene Location: 50860-52527 bp Ori: QIT67164.1 Gene: ltrA Feature: domain Description: RVT_N Location: 50908-51145 bp Feature: domain Description: RVT_N Location: 50908-51 1 45 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51196-51838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 1 96-51 838 bp Feature: domain Description: GIIM Note: maturase Location: 51889-52123 bp Feature: domain Description: GIIM Note: maturase Location: 51 889-521 23 bp Feature: domain Description: HNHc Note: nucleases Location: 52333-52492 bp Feature: domain Description: HNHc Note: nucleases Location: 52333-52492 bp Feature: gene Location: 52806-52997 bp Feature: gene Location: 52994-53416 bp Ori: QIT67166.1 Feature: domain Description: DUF1380 Location: 52997-53294 bp Feature: domain Description: DUF1 380 Location: 52997-53294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: CP050745.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST53 chromosome, complete genome (4970193 bp)
Overview 1 RT 1: 4959026-4965323 bp Neighborhood of RT #1 [4959026, 4965385] PRK10216 PRK10473 RVT-Retrons PRK09692 Feature: gene Location: 4959026-4959985 bp Ori: QIT66791.1 Gene: yidZ Feature: domain Description: PRK10216 Location: 4959029-4959980 bp Feature: domain Description: PRK102 16 Location: 495902 9-4959980 bp Feature: gene Location: 4959954-4961141 bp Ori: QIT66792.1 Feature: domain Description: PRK10473 Location: 4959957-4961133 bp Feature: domain Description: PRK10473 Location: 4959957-4961133 bp Feature: gene Location: 4961943-4962812 bp Ori: QIT66991.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4961988-4962573 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4961988-4962 573 bp Feature: gene Location: 4962878-4963840 bp Feature: gene Location: 4964165-4965385 bp Feature: domain Description: PRK09692 Location: 4964174-4965323 bp Feature: domain Description: PRK09692 Location: 4964174-496532 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons, PRK09692 (Integrase; provisional)