myRT

myRT report for GCA_012109195.1_ASM1210919v1

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Seq: CP050813.1 Yokenella regensburgei strain W13 plasmid pYRW13-131, complete sequence (131292 bp)
Overview 1 RT 1: 16980-28456 bp 2 RT 2: 33952-38092 bp Neighborhood of RT #1 [16980, 28455] Rve RVT-UG4 PRK15211 PRK15211 PRK15213 PRK15213 DDE_Tnp_Tn3 RVT-GII DDE_Tnp_Tn3 DUF4158 Neighborhood of RT #2 [33952, 38157] RVT-GII GIIM EAL HTH_LUXR Feature: gene Location: 16980-17683 bp Feature: domain Description: Rve Location: 16983-17295 bp Feature: domain Description: Rve Location: 1 6983-1 7295 bp Feature: gene Location: 17979-18632 bp Feature: gene Location: 19031-19982 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 19352-19583 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 9352-1 9583 bp Feature: gene Location: 20585-21281 bp Feature: domain Description: PRK15211 Location: 20681-20726 bp Feature: domain Description: PRK1 521 1 Location: 20681 -20726 bp Feature: domain Description: PRK15211 Location: 20987-21080 bp Feature: domain Description: PRK1 521 1 Location: 20987-21 080 bp Feature: gene Location: 21247-23733 bp Feature: domain Description: PRK15213 Location: 23218-23317 bp Feature: domain Description: PRK1 521 3 Location: 2321 8-2331 7 bp Feature: domain Description: PRK15213 Location: 23632-23731 bp Feature: domain Description: PRK1 521 3 Location: 23632-23731 bp Feature: gene Location: 25288-25695 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 25291-25633 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 25291 -25633 bp Feature: gene Location: 25764-27022 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25974-26415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25974-2641 5 bp Feature: gene Location: 27602-28192 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 27632-28127 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 27632-281 27 bp Feature: gene Location: 28318-28455 bp Feature: domain Description: DUF4158 Location: 28336-28456 bp Feature: domain Description: DUF41 58 Location: 28336-28456 bp Feature: gene Location: 33952-34314 bp Feature: gene Location: 34343-34615 bp Feature: gene Location: 35191-36444 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35401-36043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35401 -36043 bp Feature: domain Description: GIIM Note: maturase Location: 36124-36328 bp Feature: domain Description: GIIM Note: maturase Location: 361 24-36328 bp Feature: gene Location: 36641-37348 bp Ori: QIU92560.1 Feature: domain Description: EAL Location: 36713-37322 bp Feature: domain Description: EAL Location: 3671 3-37322 bp Feature: gene Location: 37498-38157 bp Ori: QIU92561.1 Feature: domain Description: HTH_LUXR Location: 37936-38092 bp Feature: domain Description: HTH_LUXR Location: 37936-38092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-UG4, PRK15211 (fimbrial chaperone), PRK15213 (outer membrane usher protein PefC), DDE_Tnp_Tn3 (pfam01526), RVT-GII, DUF4158 (pfam13700), GIIM (pfam08388), EAL (smart00052), HTH_LUXR (smart00421)

Seq: CP050811.1 Yokenella regensburgei strain W13 chromosome, complete genome (4962579 bp)
Overview 1 RT 1: 4463459-4469058 bp Neighborhood of RT #1 [4463459, 4469066] PRK04123 PRK10572 RVT-Retrons DedA thiQ Feature: gene Location: 4463459-4465150 bp Ori: QIU91705.1 Gene: araB Feature: domain Description: PRK04123 Location: 4463462-4465118 bp Feature: domain Description: PRK0412 3 Location: 4463462 -4465118 bp Feature: gene Location: 4465476-4466321 bp Ori: QIU91706.1 Gene: araC Feature: domain Description: PRK10572 Location: 4465479-4466319 bp Feature: domain Description: PRK10572 Location: 4465479-4466319 bp Feature: gene Location: 4466302-4467246 bp Ori: QIU91707.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4466437-4466989 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4466437-4466989 bp Feature: gene Location: 4467601-4468368 bp Ori: QIU91708.1 Feature: domain Description: DedA Location: 4467625-4468213 bp Feature: domain Description: DedA Location: 446762 5-44682 13 bp Feature: gene Location: 4468365-4469066 bp Ori: QIU91709.1 Gene: thiQ Feature: domain Description: thiQ Location: 4468368-4469058 bp Feature: domain Description: thiQ Location: 4468368-4469058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK04123 (ribulokinase; Provisional), PRK10572 (arabinose operon transcriptional regulator AraC), RVT-Retrons, DedA (COG0586), thiQ (TIGR01277)