myRT

myRT report for GCA_012151295.1_ASM1215129v1

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Seq: AP022862.1 Vibrio alginolyticus VIO5 DNA, chromosome 2, complete sequence (1759333 bp)
Overview 1 RT 1: 616167-624502 bp Neighborhood of RT #1 [616167, 624669] KOG3180 KOG2415 RVT_N RVT-GII GIIM HNH LivG LC_FACS_bac1 Feature: gene Location: 616167-616919 bp Ori: BCB49081.1 Feature: domain Description: KOG3180 Location: 616170-616911 bp Feature: domain Description: KOG31 80 Location: 61 61 70-61 691 1 bp Feature: gene Location: 617076-618713 bp Ori: BCB49082.1 Feature: domain Description: KOG2415 Location: 617079-618711 bp Feature: domain Description: KOG241 5 Location: 61 7079-61 871 1 bp Feature: gene Location: 619887-621602 bp Ori: BCB49083.1 Feature: domain Description: RVT_N Location: 619944-620187 bp Feature: domain Description: RVT_N Location: 61 9944-6201 87 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 620232-620877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 620232-620877 bp Feature: domain Description: GIIM Note: maturase Location: 620931-621162 bp Feature: domain Description: GIIM Note: maturase Location: 620931 -621 1 62 bp Feature: domain Description: HNH Note: nucleases Location: 621414-621549 bp Feature: domain Description: HNH Note: nucleases Location: 621 41 4-621 549 bp Feature: gene Location: 621917-622717 bp Ori: BCB49084.1 Feature: domain Description: LivG Location: 621932-622688 bp Feature: domain Description: LivG Location: 621 932-622688 bp Feature: gene Location: 622717-624669 bp Ori: BCB49085.1 Feature: domain Description: LC_FACS_bac1 Location: 622819-624502 bp Feature: domain Description: LC_FACS_bac1 Location: 62281 9-624502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG3180 (KOG3180, Electron transfer flavoprotein, beta subunit ), KOG2415 (KOG2415, Electron transfer flavoprotein ubiquinone oxidoreductase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), LivG (COG0411), LC_FACS_bac1 (cd17641)

Seq: AP022861.1 Vibrio alginolyticus VIO5 DNA, chromosome 1, complete sequence (3426062 bp)
Overview 1 RT 1: 2570344-2575359 bp 2 RT 2: 2948704-2956480 bp Neighborhood of RT #1 [2570344, 2575376] DDE_Tnp_1 HTH_29 HTH_33 DDE_3 RVT-GII GIIM COG5421 ECM27 Neighborhood of RT #2 [2948704, 2956488] PRK11059 RVT-GII Intron_maturas2 HNHc PRK09010 PRK10100 Feature: gene Location: 2570344-2570982 bp Ori: BCB47796.1 Feature: domain Description: DDE_Tnp_1 Location: 2570353-2570722 bp Feature: domain Description: DDE_Tnp_1 Location: 2 570353-2 57072 2 bp Feature: gene Location: 2571122-2571964 bp Ori: BCB47797.1 Feature: domain Description: HTH_29 Location: 2571206-2571371 bp Feature: domain Description: HTH_2 9 Location: 2 5712 06-2 571371 bp Feature: domain Description: HTH_33 Location: 2571404-2571575 bp Feature: domain Description: HTH_33 Location: 2 571404-2 571575 bp Feature: domain Description: DDE_3 Location: 2571617-2571893 bp Feature: domain Description: DDE_3 Location: 2 571617-2 571893 bp Feature: gene Location: 2571997-2573301 bp Ori: BCB47798.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2572285-2572927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 572 2 85-2 572 92 7 bp Feature: domain Description: GIIM Note: maturase Location: 2572999-2573206 bp Feature: domain Description: GIIM Note: maturase Location: 2 572 999-2 5732 06 bp Feature: gene Location: 2573915-2574772 bp Ori: BCB47799.1 Feature: domain Description: COG5421 Location: 2573978-2574668 bp Feature: domain Description: COG542 1 Location: 2 573978-2 574668 bp Feature: gene Location: 2574849-2575376 bp Ori: BCB47800.1 Feature: domain Description: ECM27 Location: 2574900-2575359 bp Feature: domain Description: ECM2 7 Location: 2 574900-2 575359 bp Feature: gene Location: 2948704-2950149 bp Feature: gene Location: 2950161-2952170 bp Ori: BCB48134.1 Feature: domain Description: PRK11059 Location: 2950173-2952084 bp Feature: domain Description: PRK11059 Location: 2 950173-2 952 084 bp Feature: gene Location: 2952501-2954387 bp Ori: BCB48135.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2952789-2953626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 952 789-2 95362 6 bp Feature: domain Description: Intron_maturas2 Location: 2953731-2954133 bp Feature: domain Description: Intron_maturas2 Location: 2 953731-2 954133 bp Feature: domain Description: HNHc Note: nucleases Location: 2954166-2954337 bp Feature: domain Description: HNHc Note: nucleases Location: 2 954166-2 954337 bp Feature: gene Location: 2955009-2955566 bp Ori: BCB48136.1 Gene: ssb Feature: domain Description: PRK09010 Location: 2955012-2955564 bp Feature: domain Description: PRK09010 Location: 2 955012 -2 955564 bp Feature: gene Location: 2955844-2956488 bp Ori: BCB48137.1 Feature: domain Description: PRK10100 Location: 2955994-2956480 bp Feature: domain Description: PRK10100 Location: 2 955994-2 956480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388), COG5421 (Transposase ), ECM27 (COG0530), PRK11059 (regulatory protein CsrD; Provisional), Intron_maturas2 (pfam01348)
HNHc (smart00507), PRK09010 (single-stranded DNA-binding protein; Provisional), PRK10100 (transcriptional regulator CsgD)