myRT

myRT report for GCA_012151595.1_ASM1215159v1

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Seq: AP022866.1 Vibrio alginolyticus YM4 DNA, chromosome 2, complete sequence (1759327 bp)
Overview 1 RT 1: 616161-624496 bp Neighborhood of RT #1 [616161, 624663] KOG3180 KOG2415 RVT_N RVT-GII GIIM HNH LivG LC_FACS_bac1 Feature: gene Location: 616161-616913 bp Ori: BCB58286.1 Feature: domain Description: KOG3180 Location: 616164-616905 bp Feature: domain Description: KOG31 80 Location: 61 61 64-61 6905 bp Feature: gene Location: 617070-618707 bp Ori: BCB58287.1 Feature: domain Description: KOG2415 Location: 617073-618705 bp Feature: domain Description: KOG241 5 Location: 61 7073-61 8705 bp Feature: gene Location: 619881-621596 bp Ori: BCB58288.1 Feature: domain Description: RVT_N Location: 619938-620181 bp Feature: domain Description: RVT_N Location: 61 9938-6201 81 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 620226-620871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 620226-620871 bp Feature: domain Description: GIIM Note: maturase Location: 620925-621156 bp Feature: domain Description: GIIM Note: maturase Location: 620925-621 1 56 bp Feature: domain Description: HNH Note: nucleases Location: 621408-621543 bp Feature: domain Description: HNH Note: nucleases Location: 621 408-621 543 bp Feature: gene Location: 621911-622711 bp Ori: BCB58289.1 Feature: domain Description: LivG Location: 621926-622682 bp Feature: domain Description: LivG Location: 621 926-622682 bp Feature: gene Location: 622711-624663 bp Ori: BCB58290.1 Feature: domain Description: LC_FACS_bac1 Location: 622813-624496 bp Feature: domain Description: LC_FACS_bac1 Location: 62281 3-624496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG3180 (KOG3180, Electron transfer flavoprotein, beta subunit ), KOG2415 (KOG2415, Electron transfer flavoprotein ubiquinone oxidoreductase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), LivG (COG0411), LC_FACS_bac1 (cd17641)

Seq: AP022865.1 Vibrio alginolyticus YM4 DNA, chromosome 1, complete sequence (3425997 bp)
Overview 1 RT 1: 2570277-2575292 bp 2 RT 2: 2948639-2956415 bp Neighborhood of RT #1 [2570277, 2575309] DDE_Tnp_1 HTH_29 HTH_33 DDE_3 RVT-GII GIIM COG5421 ECM27 Neighborhood of RT #2 [2948639, 2956423] PRK11059 RVT-GII Intron_maturas2 HNHc PRK09010 PRK10100 Feature: gene Location: 2570277-2570915 bp Ori: BCB57001.1 Feature: domain Description: DDE_Tnp_1 Location: 2570286-2570655 bp Feature: domain Description: DDE_Tnp_1 Location: 2 5702 86-2 570655 bp Feature: gene Location: 2571055-2571897 bp Ori: BCB57002.1 Feature: domain Description: HTH_29 Location: 2571139-2571304 bp Feature: domain Description: HTH_2 9 Location: 2 571139-2 571304 bp Feature: domain Description: HTH_33 Location: 2571337-2571508 bp Feature: domain Description: HTH_33 Location: 2 571337-2 571508 bp Feature: domain Description: DDE_3 Location: 2571550-2571826 bp Feature: domain Description: DDE_3 Location: 2 571550-2 57182 6 bp Feature: gene Location: 2571930-2573234 bp Ori: BCB57003.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2572218-2572860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 572 2 18-2 572 860 bp Feature: domain Description: GIIM Note: maturase Location: 2572932-2573139 bp Feature: domain Description: GIIM Note: maturase Location: 2 572 932 -2 573139 bp Feature: gene Location: 2573848-2574705 bp Ori: BCB57004.1 Feature: domain Description: COG5421 Location: 2573911-2574601 bp Feature: domain Description: COG542 1 Location: 2 573911-2 574601 bp Feature: gene Location: 2574782-2575309 bp Ori: BCB57005.1 Feature: domain Description: ECM27 Location: 2574833-2575292 bp Feature: domain Description: ECM2 7 Location: 2 574833-2 5752 92 bp Feature: gene Location: 2948639-2950084 bp Feature: gene Location: 2950096-2952105 bp Ori: BCB57339.1 Feature: domain Description: PRK11059 Location: 2950108-2952019 bp Feature: domain Description: PRK11059 Location: 2 950108-2 952 019 bp Feature: gene Location: 2952436-2954322 bp Ori: BCB57340.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2952724-2953561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 952 72 4-2 953561 bp Feature: domain Description: Intron_maturas2 Location: 2953666-2954068 bp Feature: domain Description: Intron_maturas2 Location: 2 953666-2 954068 bp Feature: domain Description: HNHc Note: nucleases Location: 2954101-2954272 bp Feature: domain Description: HNHc Note: nucleases Location: 2 954101-2 9542 72 bp Feature: gene Location: 2954944-2955501 bp Ori: BCB57341.1 Gene: ssb Feature: domain Description: PRK09010 Location: 2954947-2955499 bp Feature: domain Description: PRK09010 Location: 2 954947-2 955499 bp Feature: gene Location: 2955779-2956423 bp Ori: BCB57342.1 Feature: domain Description: PRK10100 Location: 2955929-2956415 bp Feature: domain Description: PRK10100 Location: 2 95592 9-2 956415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388), COG5421 (Transposase ), ECM27 (COG0530), PRK11059 (regulatory protein CsrD; Provisional), Intron_maturas2 (pfam01348)
HNHc (smart00507), PRK09010 (single-stranded DNA-binding protein; Provisional), PRK10100 (transcriptional regulator CsgD)