myRT

myRT report for GCA_012166915.1_ASM1216691v1

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Seq: CP050836.1 Klebsiella pneumoniae strain Bckp021 plasmid pBckp021-2, complete sequence (237942 bp)
Overview 1 RT 1: 82723-87735 bp Neighborhood of RT #1 [82723, 87735] HHA RVT-GII INT_Cre_C Feature: gene Location: 82723-83790 bp Feature: gene Location: 83876-84130 bp Ori: QIV31749.1 Feature: domain Description: HHA Location: 83927-84110 bp Feature: domain Description: HHA Location: 83927-841 1 0 bp Feature: gene Location: 84643-86130 bp Ori: QIV31750.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85048-85738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85048-85738 bp Feature: gene Location: 86216-87352 bp Ori: QIV31751.1 Feature: domain Description: INT_Cre_C Location: 86639-87293 bp Feature: domain Description: INT_Cre_C Location: 86639-87293 bp Feature: gene Location: 87418-87735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799)

Seq: CP050834.1 Klebsiella pneumoniae strain Bckp021 chromosome, complete genome (5219537 bp)
Overview 1 RT 1: 1877851-1885719 bp 2 RT 2: 2234116-2239531 bp 3 RT 3: 3532861-3538786 bp 4 RT 4: 3945227-3950511 bp 5 RT 5: 4167712-4172555 bp 6 RT 6: 4690675-4698352 bp Neighborhood of RT #1 [1877851, 1885724] PHA00080 Phage_GPA RVT-GII Q Neighborhood of RT #2 [2234116, 2239533] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #3 [3532861, 3538794] PRK10554 PRK10276 RVT-GII XerC PinE Neighborhood of RT #4 [3945227, 3950511] PRK10276 RVT-GII RVT-GII PinE Neighborhood of RT #5 [4167712, 4172555] PRK10276 RVT-GII Dcm Dcm Neighborhood of RT #6 [4690675, 4698369] EAL RVT-UG4 FimD FimC Feature: gene Location: 1877851-1878078 bp Ori: QIV27978.1 Feature: domain Description: PHA00080 Location: 1877857-1878070 bp Feature: domain Description: PHA00080 Location: 1877857-1878070 bp Feature: gene Location: 1878098-1880480 bp Feature: domain Description: Phage_GPA Location: 1878662-1879625 bp Feature: domain Description: Phage_GPA Location: 1878662 -187962 5 bp Feature: gene Location: 1880941-1882428 bp Ori: QIV27979.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1881346-1882036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1881346-1882 036 bp Feature: gene Location: 1882985-1884649 bp Feature: gene Location: 1884696-1885724 bp Ori: QIV27981.1 Feature: domain Description: Q Location: 1884699-1885719 bp Feature: domain Description: Q Location: 1884699-1885719 bp Feature: gene Location: 2234116-2235252 bp Ori: QIV31164.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2234296-2235199 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2 2 342 96-2 2 35199 bp Feature: gene Location: 2235423-2235665 bp Ori: QIV28303.1 Feature: domain Description: DinI Location: 2235474-2235654 bp Feature: domain Description: DinI Location: 2 2 35474-2 2 35654 bp Feature: gene Location: 2236280-2237767 bp Ori: QIV28304.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2236685-2237375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 36685-2 2 37375 bp Feature: gene Location: 2237846-2238265 bp Ori: QIV28305.1 Gene: umuD Feature: domain Description: PRK10276 Location: 2237849-2238260 bp Feature: domain Description: PRK102 76 Location: 2 2 37849-2 2 382 60 bp Feature: gene Location: 2238268-2239533 bp Ori: QIV28306.1 Feature: domain Description: umuC Location: 2238271-2239531 bp Feature: domain Description: umuC Location: 2 2 382 71-2 2 39531 bp Feature: gene Location: 3532861-3534006 bp Ori: QIV29512.1 Gene: ompC Feature: domain Description: PRK10554 Location: 3532903-3534004 bp Feature: domain Description: PRK10554 Location: 3532 903-3534004 bp Feature: gene Location: 3534611-3534982 bp Ori: QIV29513.1 Feature: domain Description: PRK10276 Location: 3534656-3534818 bp Feature: domain Description: PRK102 76 Location: 3534656-3534818 bp Feature: gene Location: 3535255-3536742 bp Ori: QIV29514.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3535660-3536350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3535660-3536350 bp Feature: gene Location: 3537746-3538168 bp Ori: QIV29515.1 Feature: domain Description: XerC Location: 3537821-3538127 bp Feature: domain Description: XerC Location: 353782 1-353812 7 bp Feature: gene Location: 3538246-3538794 bp Ori: QIV29516.1 Feature: domain Description: PinE Location: 3538249-3538786 bp Feature: domain Description: PinE Location: 35382 49-3538786 bp Feature: gene Location: 3945227-3945598 bp Ori: QIV29870.1 Feature: domain Description: PRK10276 Location: 3945272-3945431 bp Feature: domain Description: PRK102 76 Location: 39452 72 -3945431 bp Feature: gene Location: 3945555-3945794 bp Feature: gene Location: 3945871-3947358 bp Ori: QIV29872.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3946276-3946966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39462 76-3946966 bp Feature: gene Location: 3947780-3949267 bp Ori: QIV29873.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3948185-3948875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3948185-3948875 bp Feature: gene Location: 3949721-3950170 bp Ori: QIV31262.1 Feature: domain Description: PinE Location: 3949730-3950162 bp Feature: domain Description: PinE Location: 3949730-3950162 bp Feature: gene Location: 3950212-3950511 bp Feature: gene Location: 4167712-4168077 bp Ori: QIV30077.1 Feature: domain Description: PRK10276 Location: 4167757-4167877 bp Feature: domain Description: PRK102 76 Location: 4167757-4167877 bp Feature: gene Location: 4168034-4168273 bp Feature: gene Location: 4168348-4169835 bp Ori: QIV30079.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4168753-4169443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4168753-4169443 bp Feature: gene Location: 4170328-4172322 bp Ori: QIV30080.1 Feature: domain Description: Dcm Location: 4170370-4171342 bp Feature: domain Description: Dcm Location: 4170370-4171342 bp Feature: domain Description: Dcm Location: 4172122-4172281 bp Feature: domain Description: Dcm Location: 4172 12 2 -4172 2 81 bp Feature: gene Location: 4172298-4172555 bp Feature: gene Location: 4690675-4690776 bp Feature: gene Location: 4690872-4692258 bp Feature: domain Description: EAL Location: 4691517-4691787 bp Feature: domain Description: EAL Location: 4691517-4691787 bp Feature: gene Location: 4692934-4694964 bp Ori: QIV31297.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4693342-4693786 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4693342 -4693786 bp Feature: gene Location: 4694964-4697558 bp Ori: QIV30567.1 Feature: domain Description: FimD Location: 4695006-4697547 bp Feature: domain Description: FimD Location: 4695006-4697547 bp Feature: gene Location: 4697605-4698369 bp Ori: QIV30568.1 Feature: domain Description: FimC Location: 4697650-4698352 bp Feature: domain Description: FimC Location: 4697650-4698352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00080 (DksA-like zinc finger domain containing protein), Phage_GPA (pfam05840), RVT-GII, Q (PHA02536), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), PRK10554 (outer membrane porin protein C; Provisional), XerC (COG4973)
PinE (COG1961), Dcm (COG0270), EAL (smart00052), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: CP050835.1 Klebsiella pneumoniae strain Bckp021 plasmid pBckp021-1, complete sequence (340492 bp)
Overview 1 RT 1: 124853-129506 bp 2 RT 2: 270432-281540 bp Neighborhood of RT #1 [124853, 129523] ArdC RVT-GII PRK10276 Neighborhood of RT #2 [270432, 281540] Usp KefB RVT-GII HTH_38 Tra8 RVT-GII GIIM PHA02517 Feature: gene Location: 124853-125284 bp Feature: gene Location: 125764-126729 bp Ori: QIV31457.1 Feature: domain Description: ArdC Location: 125890-126724 bp Feature: domain Description: ArdC Location: 125890-126724 bp Feature: gene Location: 127199-128686 bp Ori: QIV31458.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127604-128294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127604-128294 bp Feature: gene Location: 128999-129114 bp Feature: gene Location: 129092-129523 bp Ori: QIV31459.1 Gene: umuD Feature: domain Description: PRK10276 Location: 129143-129506 bp Feature: domain Description: PRK10276 Location: 129143 -129506 bp Feature: gene Location: 270432-270851 bp Ori: QIV31584.1 Feature: domain Description: Usp Location: 270435-270846 bp Feature: domain Description: Usp Location: 27043 5-270846 bp Feature: gene Location: 270903-272102 bp Ori: QIV31585.1 Feature: domain Description: KefB Location: 270909-272025 bp Feature: domain Description: KefB Location: 270909-272025 bp Feature: gene Location: 272623-274110 bp Ori: QIV31586.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273028-273718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273 028-273 718 bp Feature: gene Location: 274963-275337 bp Feature: gene Location: 275352-275768 bp Feature: gene Location: 276513-277664 bp Ori: QIV31589.1 Feature: domain Description: HTH_38 Location: 276528-276636 bp Feature: domain Description: HTH_3 8 Location: 276528-27663 6 bp Feature: domain Description: Tra8 Location: 276672-277653 bp Feature: domain Description: Tra8 Location: 276672-277653 bp Feature: gene Location: 277728-278157 bp Feature: gene Location: 278830-280338 bp Ori: QIV31673.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279088-279820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279088-279820 bp Feature: domain Description: GIIM Note: maturase Location: 279895-280117 bp Feature: domain Description: GIIM Note: maturase Location: 279895-280117 bp Feature: gene Location: 280419-280895 bp Feature: domain Description: PHA02517 Location: 280422-280887 bp Feature: domain Description: PHA02517 Location: 280422-280887 bp Feature: gene Location: 281034-281540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), Usp (pfam00582), KefB (COG0475), HTH_38 (pfam13936), Tra8 (COG2826), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)