myRT

myRT report for GCA_012221365.1_ASM1222136v1

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Seq: CP050863.1 Escherichia coli strain 8-3-DC15 plasmid unnamed1, complete sequence (233798 bp)
Overview 1 RT 1: 41635-44275 bp 2 RT 2: 171792-174402 bp 3 RT 3: 183909-188084 bp 4 RT 4: 209549-219325 bp Neighborhood of RT #1 [41635, 44292] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 Neighborhood of RT #2 [171792, 174843] Y2_Tnp RVT-GII InsE Neighborhood of RT #3 [183909, 188084] OrfB_IS605 DDE_Tnp_IS66_C RVT-GII GIIM RVT-GII Tra5 PRK09413 Neighborhood of RT #4 [209549, 219749] HTH_23 HTH_33 DDE_3 HTH_23 InsE RVT-GII DDE_Tnp_1 DDE_Tnp_1 DUF1380 RVT_N RVT-GII GIIM HNHc InsA Feature: gene Location: 41635-42117 bp Feature: domain Description: COG3547 Location: 41653-42106 bp Feature: domain Description: COG3547 Location: 41 653-421 06 bp Feature: gene Location: 42147-42326 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 42192-42303 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 421 92-42303 bp Feature: gene Location: 42409-43587 bp Ori: QIV73000.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42556-43210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42556-4321 0 bp Feature: domain Description: GIIM Note: maturase Location: 43288-43510 bp Feature: domain Description: GIIM Note: maturase Location: 43288-4351 0 bp Feature: gene Location: 43637-44056 bp Feature: gene Location: 44113-44292 bp Feature: domain Description: DDE_Tnp_IS66 Location: 44119-44275 bp Feature: domain Description: DDE_Tnp_IS66 Location: 441 1 9-44275 bp Feature: gene Location: 171792-172221 bp Feature: domain Description: Y2_Tnp Location: 171801-171972 bp Feature: domain Description: Y2_Tnp Location: 1 71 801 -1 71 972 bp Feature: gene Location: 172269-172634 bp Feature: gene Location: 173354-173593 bp Ori: QIV72964.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173360-173567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 73360-1 73567 bp Feature: gene Location: 173788-174154 bp Feature: gene Location: 174156-174843 bp Feature: domain Description: InsE Location: 174159-174402 bp Feature: domain Description: InsE Location: 1 741 59-1 74402 bp Feature: gene Location: 183909-184079 bp Feature: domain Description: OrfB_IS605 Location: 183915-184077 bp Feature: domain Description: OrfB_IS605 Location: 1 8391 5-1 84077 bp Feature: gene Location: 184158-184271 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 184161-184251 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 841 61 -1 84251 bp Feature: gene Location: 184405-184932 bp Ori: QIV72968.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184411-184555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8441 1 -1 84555 bp Feature: domain Description: GIIM Note: maturase Location: 184639-184855 bp Feature: domain Description: GIIM Note: maturase Location: 1 84639-1 84855 bp Feature: gene Location: 185016-186325 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185283-185940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 85283-1 85940 bp Feature: gene Location: 186371-186604 bp Feature: domain Description: Tra5 Location: 186395-186587 bp Feature: domain Description: Tra5 Location: 1 86395-1 86587 bp Feature: gene Location: 187769-188084 bp Ori: QIV72969.1 Feature: domain Description: PRK09413 Location: 187772-188084 bp Feature: domain Description: PRK0941 3 Location: 1 87772-1 88084 bp Feature: gene Location: 209549-210580 bp Ori: QIV72987.1 Feature: domain Description: HTH_23 Location: 209627-209768 bp Feature: domain Description: HTH_23 Location: 209627-209768 bp Feature: domain Description: HTH_33 Location: 209873-210020 bp Feature: domain Description: HTH_33 Location: 209873-21 0020 bp Feature: domain Description: DDE_3 Location: 210080-210497 bp Feature: domain Description: DDE_3 Location: 21 0080-21 0497 bp Feature: gene Location: 210748-211392 bp Ori: QIV73013.1 Feature: domain Description: HTH_23 Location: 210832-210919 bp Feature: domain Description: HTH_23 Location: 21 0832-21 091 9 bp Feature: domain Description: InsE Location: 211048-211243 bp Feature: domain Description: InsE Location: 21 1 048-21 1 243 bp Feature: gene Location: 211486-212133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211621-212107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 621 -21 21 07 bp Feature: gene Location: 212132-212914 bp Feature: domain Description: DDE_Tnp_1 Location: 212138-212846 bp Feature: domain Description: DDE_Tnp_1 Location: 21 21 38-21 2846 bp Feature: gene Location: 213117-214307 bp Ori: QIV73014.1 Feature: domain Description: DDE_Tnp_1 Location: 213411-214023 bp Feature: domain Description: DDE_Tnp_1 Location: 21 341 1 -21 4023 bp Feature: gene Location: 215221-215685 bp Ori: QIV73016.1 Feature: domain Description: DUF1380 Location: 215275-215560 bp Feature: domain Description: DUF1 380 Location: 21 5275-21 5560 bp Feature: gene Location: 215682-215873 bp Feature: gene Location: 216243-217916 bp Ori: QIV72988.1 Gene: ltrA Feature: domain Description: RVT_N Location: 216291-216534 bp Feature: domain Description: RVT_N Location: 21 6291 -21 6534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216579-217224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 6579-21 7224 bp Feature: domain Description: GIIM Note: maturase Location: 217278-217509 bp Feature: domain Description: GIIM Note: maturase Location: 21 7278-21 7509 bp Feature: domain Description: HNHc Note: nucleases Location: 217710-217869 bp Feature: domain Description: HNHc Note: nucleases Location: 21 771 0-21 7869 bp Feature: gene Location: 218710-218898 bp Feature: gene Location: 219052-219749 bp Feature: domain Description: InsA Location: 219058-219325 bp Feature: domain Description: InsA Location: 21 9058-21 9325 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), Y2_Tnp (pfam04986), InsE (COG2963), OrfB_IS605 (pfam01385), Tra5 (COG2801), PRK09413 (IS2 repressor TnpA; Reviewed)
HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), DDE_Tnp_1 (pfam01609), DUF1380 (pfam07128), RVT_N (pfam13655), HNHc (smart00507), InsA (COG3677)