myRT

myRT report for GCA_012221565.1_ASM1222156v1

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Seq: CP050866.1 Escherichia coli strain 8-3-Ti3 plasmid unnamed1, complete sequence (233800 bp)
Overview 1 RT 1: 41636-44276 bp 2 RT 2: 171794-174404 bp 3 RT 3: 183911-188086 bp 4 RT 4: 209551-219327 bp Neighborhood of RT #1 [41636, 44293] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 Neighborhood of RT #2 [171794, 174845] Y2_Tnp RVT-GII InsE Neighborhood of RT #3 [183911, 188086] OrfB_IS605 DDE_Tnp_IS66_C RVT-GII GIIM RVT-GII Tra5 PRK09413 Neighborhood of RT #4 [209551, 219751] HTH_23 HTH_33 DDE_3 HTH_23 InsE RVT-GII DDE_Tnp_1 DDE_Tnp_1 DUF1380 RVT_N RVT-GII GIIM HNHc InsA Feature: gene Location: 41636-42118 bp Feature: domain Description: COG3547 Location: 41654-42107 bp Feature: domain Description: COG3547 Location: 41 654-421 07 bp Feature: gene Location: 42148-42327 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 42193-42304 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 421 93-42304 bp Feature: gene Location: 42410-43588 bp Ori: QIV77522.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42557-43211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42557-4321 1 bp Feature: domain Description: GIIM Note: maturase Location: 43289-43511 bp Feature: domain Description: GIIM Note: maturase Location: 43289-4351 1 bp Feature: gene Location: 43638-44057 bp Feature: gene Location: 44114-44293 bp Feature: domain Description: DDE_Tnp_IS66 Location: 44120-44276 bp Feature: domain Description: DDE_Tnp_IS66 Location: 441 20-44276 bp Feature: gene Location: 171794-172223 bp Feature: domain Description: Y2_Tnp Location: 171803-171974 bp Feature: domain Description: Y2_Tnp Location: 1 71 803-1 71 974 bp Feature: gene Location: 172271-172636 bp Feature: gene Location: 173356-173595 bp Ori: QIV77486.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173362-173569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 73362-1 73569 bp Feature: gene Location: 173790-174156 bp Feature: gene Location: 174158-174845 bp Feature: domain Description: InsE Location: 174161-174404 bp Feature: domain Description: InsE Location: 1 741 61 -1 74404 bp Feature: gene Location: 183911-184081 bp Feature: domain Description: OrfB_IS605 Location: 183917-184079 bp Feature: domain Description: OrfB_IS605 Location: 1 8391 7-1 84079 bp Feature: gene Location: 184160-184273 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 184163-184253 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 841 63-1 84253 bp Feature: gene Location: 184407-184934 bp Ori: QIV77490.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184413-184557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8441 3-1 84557 bp Feature: domain Description: GIIM Note: maturase Location: 184641-184857 bp Feature: domain Description: GIIM Note: maturase Location: 1 84641 -1 84857 bp Feature: gene Location: 185018-186327 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185285-185942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 85285-1 85942 bp Feature: gene Location: 186373-186606 bp Feature: domain Description: Tra5 Location: 186397-186589 bp Feature: domain Description: Tra5 Location: 1 86397-1 86589 bp Feature: gene Location: 187771-188086 bp Ori: QIV77491.1 Feature: domain Description: PRK09413 Location: 187774-188086 bp Feature: domain Description: PRK0941 3 Location: 1 87774-1 88086 bp Feature: gene Location: 209551-210582 bp Ori: QIV77510.1 Feature: domain Description: HTH_23 Location: 209629-209770 bp Feature: domain Description: HTH_23 Location: 209629-209770 bp Feature: domain Description: HTH_33 Location: 209875-210022 bp Feature: domain Description: HTH_33 Location: 209875-21 0022 bp Feature: domain Description: DDE_3 Location: 210082-210499 bp Feature: domain Description: DDE_3 Location: 21 0082-21 0499 bp Feature: gene Location: 210750-211394 bp Ori: QIV77533.1 Feature: domain Description: HTH_23 Location: 210834-210921 bp Feature: domain Description: HTH_23 Location: 21 0834-21 0921 bp Feature: domain Description: InsE Location: 211050-211245 bp Feature: domain Description: InsE Location: 21 1 050-21 1 245 bp Feature: gene Location: 211488-212135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211623-212109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 623-21 21 09 bp Feature: gene Location: 212134-212916 bp Feature: domain Description: DDE_Tnp_1 Location: 212140-212848 bp Feature: domain Description: DDE_Tnp_1 Location: 21 21 40-21 2848 bp Feature: gene Location: 213119-214309 bp Ori: QIV77534.1 Feature: domain Description: DDE_Tnp_1 Location: 213413-214025 bp Feature: domain Description: DDE_Tnp_1 Location: 21 341 3-21 4025 bp Feature: gene Location: 215223-215687 bp Ori: QIV77536.1 Feature: domain Description: DUF1380 Location: 215277-215562 bp Feature: domain Description: DUF1 380 Location: 21 5277-21 5562 bp Feature: gene Location: 215684-215875 bp Feature: gene Location: 216245-217918 bp Ori: QIV77511.1 Gene: ltrA Feature: domain Description: RVT_N Location: 216293-216536 bp Feature: domain Description: RVT_N Location: 21 6293-21 6536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216581-217226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 6581 -21 7226 bp Feature: domain Description: GIIM Note: maturase Location: 217280-217511 bp Feature: domain Description: GIIM Note: maturase Location: 21 7280-21 751 1 bp Feature: domain Description: HNHc Note: nucleases Location: 217712-217871 bp Feature: domain Description: HNHc Note: nucleases Location: 21 771 2-21 7871 bp Feature: gene Location: 218712-218900 bp Feature: gene Location: 219054-219751 bp Feature: domain Description: InsA Location: 219060-219327 bp Feature: domain Description: InsA Location: 21 9060-21 9327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), Y2_Tnp (pfam04986), InsE (COG2963), OrfB_IS605 (pfam01385), Tra5 (COG2801), PRK09413 (IS2 repressor TnpA; Reviewed)
HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), DDE_Tnp_1 (pfam01609), DUF1380 (pfam07128), RVT_N (pfam13655), HNHc (smart00507), InsA (COG3677)