myRT

myRT report for GCA_012271835.1_ASM1227183v1

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Seq: CP048837.1 [Clostridium] innocuum strain LC-LUMC-CI-001 chromosome, complete genome (4289702 bp)
Overview 1 RT 1: 1327312-1334733 bp 2 RT 2: 1666741-1670444 bp 3 RT 3: 3196419-3203437 bp 4 RT 4: 3224383-3229237 bp 5 RT 5: 3394681-3399728 bp Neighborhood of RT #1 [1327312, 1334733] Resolvase COG3666 DDE_Tnp_1_6 RVT-GII GIIM Neighborhood of RT #2 [1666741, 1670575] RPOL9 RPOL9 Y2_Tnp RVT-GII GIIM Zn_Tnp_IS91 Y2_Tnp KOG3882 Neighborhood of RT #3 [3196419, 3203535] Spr RVT-GII Intron_maturas2 VirB4_CagE VirB4_CagE PrgI Neighborhood of RT #4 [3224383, 3229320] RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Neighborhood of RT #5 [3394681, 3399728] HTH_XRE Rol_Rep_N Rep_trans DUF3789 group_II_RT_mat RVT-GII Feature: gene Location: 1327312-1328661 bp Ori: QIX08728.1 Feature: domain Description: Resolvase Location: 1327321-1327783 bp Feature: domain Description: Resolvase Location: 1 327321 -1 327783 bp Feature: gene Location: 1329229-1330632 bp Ori: QIX08729.1 Feature: domain Description: COG3666 Location: 1329247-1329532 bp Feature: domain Description: COG3666 Location: 1 329247-1 329532 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1330216-1330588 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 33021 6-1 330588 bp Feature: gene Location: 1331344-1332639 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1331545-1332163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 331 545-1 3321 63 bp Feature: domain Description: GIIM Note: maturase Location: 1332217-1332427 bp Feature: domain Description: GIIM Note: maturase Location: 1 33221 7-1 332427 bp Feature: gene Location: 1332712-1333966 bp Feature: gene Location: 1334126-1334733 bp Feature: gene Location: 1666741-1666950 bp Ori: QIX09007.1 Feature: domain Description: RPOL9 Location: 1666786-1666831 bp Feature: domain Description: RPOL9 Location: 1 666786-1 666831 bp Feature: domain Description: RPOL9 Location: 1666891-1666927 bp Feature: domain Description: RPOL9 Location: 1 666891 -1 666927 bp Feature: gene Location: 1666892-1667362 bp Ori: QIX11407.1 Feature: domain Description: Y2_Tnp Location: 1666895-1667120 bp Feature: domain Description: Y2_Tnp Location: 1 666895-1 6671 20 bp Feature: gene Location: 1667952-1669223 bp Ori: QIX09008.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1668207-1668876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 668207-1 668876 bp Feature: domain Description: GIIM Note: maturase Location: 1668966-1669161 bp Feature: domain Description: GIIM Note: maturase Location: 1 668966-1 6691 61 bp Feature: gene Location: 1669448-1669957 bp Ori: QIX09009.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1669457-1669655 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 669457-1 669655 bp Feature: domain Description: Y2_Tnp Location: 1669787-1669889 bp Feature: domain Description: Y2_Tnp Location: 1 669787-1 669889 bp Feature: gene Location: 1670240-1670575 bp Ori: QIX09010.1 Feature: domain Description: KOG3882 Location: 1670282-1670444 bp Feature: domain Description: KOG3882 Location: 1 670282-1 670444 bp Feature: gene Location: 3196419-3198086 bp Ori: QIX11443.1 Feature: domain Description: Spr Location: 3197718-3198066 bp Feature: domain Description: Spr Location: 31 9771 8-31 98066 bp Feature: gene Location: 3198366-3198638 bp Feature: gene Location: 3198762-3200552 bp Ori: QIX10386.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3199029-3199842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 99029-31 99842 bp Feature: domain Description: Intron_maturas2 Location: 3199932-3200220 bp Feature: domain Description: Intron_maturas2 Location: 31 99932-3200220 bp Feature: gene Location: 3201045-3203195 bp Ori: QIX10387.1 Feature: domain Description: VirB4_CagE Location: 3201147-3201351 bp Feature: domain Description: VirB4_CagE Location: 3201 1 47-3201 351 bp Feature: domain Description: VirB4_CagE Location: 3201825-3203157 bp Feature: domain Description: VirB4_CagE Location: 3201 825-32031 57 bp Feature: gene Location: 3203149-3203535 bp Ori: QIX10388.1 Feature: domain Description: PrgI Location: 3203164-3203437 bp Feature: domain Description: PrgI Location: 32031 64-3203437 bp Feature: gene Location: 3224383-3224868 bp Feature: gene Location: 3224956-3225117 bp Feature: gene Location: 3225284-3227194 bp Ori: QIX10411.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3225617-3226355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322561 7-3226355 bp Feature: domain Description: HNHc Note: nucleases Location: 3226910-3227075 bp Feature: domain Description: HNHc Note: nucleases Location: 322691 0-3227075 bp Feature: gene Location: 3227936-3228070 bp Ori: QIX10412.1 Feature: domain Description: DUF3789 Location: 3227948-3228038 bp Feature: domain Description: DUF3789 Location: 3227948-3228038 bp Feature: gene Location: 3228085-3229320 bp Ori: QIX10413.1 Feature: domain Description: HTH_XRE Location: 3228157-3228301 bp Feature: domain Description: HTH_XRE Location: 32281 57-3228301 bp Feature: domain Description: Rol_Rep_N Location: 3228337-3228598 bp Feature: domain Description: Rol_Rep_N Location: 3228337-3228598 bp Feature: domain Description: Rep_trans Location: 3228622-3229237 bp Feature: domain Description: Rep_trans Location: 3228622-3229237 bp Feature: gene Location: 3394681-3395877 bp Ori: QIX10558.1 Feature: domain Description: HTH_XRE Location: 3394705-3394858 bp Feature: domain Description: HTH_XRE Location: 3394705-3394858 bp Feature: domain Description: Rol_Rep_N Location: 3394891-3395155 bp Feature: domain Description: Rol_Rep_N Location: 3394891 -33951 55 bp Feature: domain Description: Rep_trans Location: 3395179-3395794 bp Feature: domain Description: Rep_trans Location: 33951 79-3395794 bp Feature: gene Location: 3395890-3396024 bp Ori: QIX10559.1 Feature: domain Description: DUF3789 Location: 3395902-3395995 bp Feature: domain Description: DUF3789 Location: 3395902-3395995 bp Feature: gene Location: 3396765-3398663 bp Gene: ltrA Feature: domain Description: group_II_RT_mat Note: maturase Location: 3396915-3397038 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 339691 5-3397038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3397443-3397620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3397443-3397620 bp Feature: gene Location: 3398830-3398991 bp Feature: gene Location: 3399082-3399728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-GII, GIIM (pfam08388), RPOL9 (smart00661), Y2_Tnp (pfam04986), Zn_Tnp_IS91 (pfam14319), KOG3882 (KOG3882, Tetraspanin family integral membrane protein ), Spr (COG0791)
Intron_maturas2 (pfam01348), VirB4_CagE (TIGR00929), PrgI (pfam12666), HNHc (smart00507), DUF3789 (pfam12664), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), group_II_RT_mat (TIGR04416)