myRT

myRT report for GCA_012272975.1_ASM1227297v1

Download annotations/find similar RTs

Seq: CP050938.1 Piscirickettsia salmonis strain Ps-2192A chromosome, complete genome (3275517 bp)
Overview 1 RT 1: 21169-24653 bp 2 RT 2: 1173424-1176884 bp 3 RT 3: 1352071-1361455 bp 4 RT 4: 1457383-1461875 bp 5 RT 5: 1996534-2003380 bp 6 RT 6: 2167133-2174134 bp 7 RT 7: 2390109-2392239 bp Neighborhood of RT #1 [21169, 24658] RVT-GII Zn_Tnp_IS91 COG2958 Neighborhood of RT #2 [1173424, 1176884] MDR_like_2 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #3 [1352071, 1361493] MFS_DtpA_like Y2_Tnp RVT-GII group_II_RT_mat HTH_23 InsE DDE_3 RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Neighborhood of RT #4 [1457383, 1461875] Y2_Tnp RVT-GII Zn_Tnp_IS91 Neighborhood of RT #5 [1996534, 2003439] RVT-GII Y2_Tnp AcrB Neighborhood of RT #6 [2167133, 2174145] Zn_Tnp_IS91 InsE RVT-GII DDE_3 HTH_Tnp_IS630 RVT-GII RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #7 [2390109, 2392316] Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 DDE_3 Feature: gene Location: 21169-21420 bp Feature: gene Location: 21829-22011 bp Feature: gene Location: 22216-23061 bp Ori: QIX54135.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22399-23014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22399-2301 4 bp Feature: gene Location: 23649-24044 bp Ori: QIX54136.1 Feature: domain Description: Zn_Tnp_IS91 Location: 23736-23928 bp Feature: domain Description: Zn_Tnp_IS91 Location: 23736-23928 bp Feature: gene Location: 24221-24658 bp Feature: domain Description: COG2958 Location: 24227-24653 bp Feature: domain Description: COG2958 Location: 24227-24653 bp Feature: gene Location: 1173424-1174386 bp Ori: QIX55141.1 Feature: domain Description: MDR_like_2 Location: 1173427-1174366 bp Feature: domain Description: MDR_like_2 Location: 1 1 73427-1 1 74366 bp Feature: gene Location: 1174506-1174760 bp Feature: gene Location: 1175262-1176113 bp Ori: QIX55143.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1175313-1175706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 7531 3-1 1 75706 bp Feature: gene Location: 1176169-1176570 bp Ori: QIX55144.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1176181-1176415 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 1 761 81 -1 1 7641 5 bp Feature: gene Location: 1176729-1176884 bp Feature: gene Location: 1352071-1352514 bp Feature: domain Description: MFS_DtpA_like Location: 1352095-1352515 bp Feature: domain Description: MFS_DtpA_like Location: 1 352095-1 35251 5 bp Feature: gene Location: 1352740-1353555 bp Ori: QIX55296.1 Feature: domain Description: Y2_Tnp Location: 1352827-1353325 bp Feature: domain Description: Y2_Tnp Location: 1 352827-1 353325 bp Feature: gene Location: 1353915-1355293 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1354326-1354407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 354326-1 354407 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1354785-1354947 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 354785-1 354947 bp Feature: gene Location: 1355578-1355922 bp Ori: QIX55297.1 Feature: domain Description: HTH_23 Location: 1355596-1355707 bp Feature: domain Description: HTH_23 Location: 1 355596-1 355707 bp Feature: gene Location: 1356814-1357084 bp Ori: QIX55298.1 Feature: domain Description: InsE Location: 1356820-1357084 bp Feature: domain Description: InsE Location: 1 356820-1 357084 bp Feature: gene Location: 1357143-1357712 bp Feature: domain Description: DDE_3 Location: 1357242-1357635 bp Feature: domain Description: DDE_3 Location: 1 357242-1 357635 bp Feature: gene Location: 1358097-1358399 bp Feature: gene Location: 1358604-1359257 bp Ori: QIX55300.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1358667-1359255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 358667-1 359255 bp Feature: gene Location: 1359809-1360309 bp Ori: QIX55301.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1359881-1360154 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 359881 -1 3601 54 bp Feature: gene Location: 1360831-1361493 bp Ori: QIX55302.1 Feature: domain Description: beta_CA_cladeB Location: 1360879-1361455 bp Feature: domain Description: beta_CA_cladeB Location: 1 360879-1 361 455 bp Feature: gene Location: 1457383-1457919 bp Feature: gene Location: 1458081-1458896 bp Ori: QIX55381.1 Feature: domain Description: Y2_Tnp Location: 1458168-1458669 bp Feature: domain Description: Y2_Tnp Location: 1 4581 68-1 458669 bp Feature: gene Location: 1459256-1460675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1459700-1459826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 459700-1 459826 bp Feature: gene Location: 1460731-1461129 bp Ori: QIX55382.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1460743-1460974 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 460743-1 460974 bp Feature: gene Location: 1461318-1461875 bp Feature: gene Location: 1996534-1996674 bp Feature: gene Location: 1996847-1996972 bp Feature: gene Location: 1997494-1998885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1998178-1998418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9981 78-1 99841 8 bp Feature: gene Location: 1999245-2000060 bp Ori: QIX55802.1 Feature: domain Description: Y2_Tnp Location: 1999332-1999833 bp Feature: domain Description: Y2_Tnp Location: 1 999332-1 999833 bp Feature: gene Location: 2000359-2003439 bp Ori: QIX55803.1 Feature: domain Description: AcrB Location: 2000368-2003380 bp Feature: domain Description: AcrB Location: 2000368-2003380 bp Feature: gene Location: 2167133-2167507 bp Ori: QIX55934.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2167139-2167352 bp Feature: domain Description: Zn_Tnp_IS91 Location: 21 671 39-21 67352 bp Feature: gene Location: 2168000-2169155 bp Feature: domain Description: InsE Location: 2168006-2168288 bp Feature: domain Description: InsE Location: 21 68006-21 68288 bp Feature: gene Location: 2169164-2169757 bp Ori: QIX57046.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2169350-2169743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 69350-21 69743 bp Feature: gene Location: 2170047-2170220 bp Feature: gene Location: 2170280-2170855 bp Ori: QIX57047.1 Feature: domain Description: DDE_3 Location: 2170385-2170778 bp Feature: domain Description: DDE_3 Location: 21 70385-21 70778 bp Feature: gene Location: 2170801-2171166 bp Ori: QIX55936.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2170816-2171155 bp Feature: domain Description: HTH_Tnp_IS630 Location: 21 7081 6-21 71 1 55 bp Feature: gene Location: 2171697-2172575 bp Ori: QIX57048.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2171730-2172216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 71 730-21 7221 6 bp Feature: gene Location: 2172600-2173019 bp Ori: QIX55937.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2172882-2173017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 72882-21 7301 7 bp Feature: gene Location: 2173429-2173758 bp Ori: QIX55938.1 Feature: domain Description: Y2_Tnp Location: 2173516-2173663 bp Feature: domain Description: Y2_Tnp Location: 21 7351 6-21 73663 bp Feature: gene Location: 2173780-2174145 bp Ori: QIX55939.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2173795-2174134 bp Feature: domain Description: HTH_Tnp_IS630 Location: 21 73795-21 741 34 bp Feature: gene Location: 2390109-2390195 bp Feature: gene Location: 2390251-2390649 bp Ori: QIX56121.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2390263-2390494 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2390263-2390494 bp Feature: gene Location: 2390734-2391342 bp Ori: QIX56122.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2390755-2390965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2390755-2390965 bp Feature: gene Location: 2391427-2391792 bp Ori: QIX56123.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2391442-2391781 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2391 442-2391 781 bp Feature: gene Location: 2391738-2392316 bp Ori: QIX57068.1 Feature: domain Description: DDE_3 Location: 2391843-2392239 bp Feature: domain Description: DDE_3 Location: 2391 843-2392239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Zn_Tnp_IS91 (pfam14319), COG2958 (Uncharacterized protein ), MDR_like_2 (cd05289), MFS_DtpA_like (cd17346), Y2_Tnp (pfam04986), group_II_RT_mat (TIGR04416), HTH_23 (pfam13384), InsE (COG2963), DDE_3 (pfam13358)
beta_CA_cladeB (cd00884), AcrB (COG0841), HTH_Tnp_IS630 (pfam01710)

Seq: CP050944.1 Piscirickettsia salmonis strain Ps-2192A plasmid Ps2192A-p6, complete sequence (12208 bp)
Overview 1 RT 1: 6126-11681 bp Neighborhood of RT #1 [6126, 11681] Y2_Tnp RVT-GII RVT-GII InsE Feature: gene Location: 6126-6452 bp Feature: gene Location: 6873-7676 bp Ori: QIX57339.1 Feature: domain Description: Y2_Tnp Location: 6960-7458 bp Feature: domain Description: Y2 _Tnp Location: 6960-7458 bp Feature: gene Location: 8026-9387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8362-9040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8362 -9040 bp Feature: gene Location: 9808-9948 bp Feature: gene Location: 10024-10290 bp Ori: QIX57341.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10081-10270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10081-102 70 bp Feature: gene Location: 10528-10798 bp Ori: QIX57342.1 Feature: domain Description: InsE Location: 10534-10798 bp Feature: domain Description: InsE Location: 10534-10798 bp Feature: gene Location: 10798-11681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y2_Tnp (pfam04986), RVT-GII, InsE (COG2963)

Seq: CP050945.1 Piscirickettsia salmonis strain Ps-2192A plasmid Ps2192A-p7, complete sequence (212888 bp)
Overview 1 RT 1: 6549-11405 bp 2 RT 2: 103100-106516 bp 3 RT 3: 114680-117412 bp 4 RT 4: 152278-155042 bp 5 RT 5: 162312-164782 bp 6 RT 6: 209178-212770 bp Neighborhood of RT #1 [6549, 11405] Y2_Tnp RVT-GII InsE Neighborhood of RT #2 [103100, 106515] Y2_Tnp RVT-GII InsE HTH_21 Rve Neighborhood of RT #3 [114680, 117456] InsE RVT-GII Rve Neighborhood of RT #4 [152278, 155042] PHA02517 InsE RVT-GII Zn_Tnp_IS91 Neighborhood of RT #5 [162312, 164796] InsE RVT-GII Zn_Tnp_IS91 major_cap_HK97 Neighborhood of RT #6 [209178, 212770] Y2_Tnp RVT-GII RVT-GII Feature: gene Location: 6549-7364 bp Ori: QIX57357.1 Feature: domain Description: Y2_Tnp Location: 6636-7134 bp Feature: domain Description: Y2_Tnp Location: 663 6-713 4 bp Feature: gene Location: 7724-9140 bp Feature: gene Location: 9524-10231 bp Ori: QIX57358.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9806-10196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9806-10196 bp Feature: gene Location: 10252-10522 bp Ori: QIX57359.1 Feature: domain Description: InsE Location: 10258-10522 bp Feature: domain Description: InsE Location: 10258-10522 bp Feature: gene Location: 10522-11405 bp Feature: gene Location: 103100-103408 bp Ori: QIX57435.1 Feature: domain Description: Y2_Tnp Location: 103187-103343 bp Feature: domain Description: Y2_Tnp Location: 103 187-103 3 43 bp Feature: gene Location: 103738-103884 bp Feature: gene Location: 104105-105232 bp Ori: QIX57437.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104387-105065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1043 87-105065 bp Feature: gene Location: 105192-106356 bp Feature: domain Description: InsE Location: 105198-105486 bp Feature: domain Description: InsE Location: 105198-105486 bp Feature: domain Description: HTH_21 Location: 105627-105789 bp Feature: domain Description: HTH_21 Location: 105627-105789 bp Feature: gene Location: 106387-106515 bp Feature: domain Description: Rve Location: 106420-106516 bp Feature: domain Description: Rve Location: 106420-106516 bp Feature: gene Location: 114680-114950 bp Ori: QIX57445.1 Feature: domain Description: InsE Location: 114686-114950 bp Feature: domain Description: InsE Location: 114686-114950 bp Feature: gene Location: 113797-114680 bp Feature: gene Location: 114910-116037 bp Ori: QIX57446.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115192-115870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115192-115870 bp Feature: gene Location: 116234-116404 bp Feature: gene Location: 116761-117456 bp Ori: QIX57448.1 Feature: domain Description: Rve Location: 116782-117412 bp Feature: domain Description: Rve Location: 116782-117412 bp Feature: gene Location: 152278-153090 bp Ori: QIX57480.1 Feature: domain Description: PHA02517 Location: 152293-153076 bp Feature: domain Description: PHA02517 Location: 152293 -153 076 bp Feature: gene Location: 153173-153466 bp Ori: QIX57481.1 Feature: domain Description: InsE Location: 153179-153458 bp Feature: domain Description: InsE Location: 153 179-153 458 bp Feature: gene Location: 153529-154119 bp Ori: QIX57482.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153532-153940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153 53 2-153 940 bp Feature: gene Location: 154381-154881 bp Ori: QIX57483.1 Feature: domain Description: Zn_Tnp_IS91 Location: 154453-154726 bp Feature: domain Description: Zn_Tnp_IS91 Location: 154453 -154726 bp Feature: gene Location: 154881-155042 bp Feature: gene Location: 162312-162615 bp Ori: QIX57555.1 Feature: domain Description: InsE Location: 162357-162615 bp Feature: domain Description: InsE Location: 1623 57-162615 bp Feature: gene Location: 161429-162312 bp Feature: gene Location: 162644-163423 bp Ori: QIX57488.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162833-163421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16283 3 -163 421 bp Feature: gene Location: 163974-164372 bp Ori: QIX57489.1 Feature: domain Description: Zn_Tnp_IS91 Location: 163986-164217 bp Feature: domain Description: Zn_Tnp_IS91 Location: 163 986-164217 bp Feature: gene Location: 164506-164796 bp Ori: QIX57556.1 Feature: domain Description: major_cap_HK97 Location: 164521-164782 bp Feature: domain Description: major_cap_HK97 Location: 164521-164782 bp Feature: gene Location: 209178-209732 bp Ori: QIX57539.1 Feature: domain Description: Y2_Tnp Location: 209265-209664 bp Feature: domain Description: Y2_Tnp Location: 209265-209664 bp Feature: gene Location: 210141-210308 bp Feature: gene Location: 210308-210541 bp Ori: QIX57541.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210425-210539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210425-21053 9 bp Feature: gene Location: 210811-211005 bp Ori: QIX57542.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210814-210976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210814-210976 bp Feature: gene Location: 212597-212770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y2_Tnp (pfam04986), RVT-GII, InsE (COG2963), HTH_21 (pfam13276), Rve (COG3316), PHA02517 (putative transposase OrfB; Reviewed), Zn_Tnp_IS91 (pfam14319), major_cap_HK97 (TIGR01554)