myRT

myRT report for GCA_012273535.1_ASM1227353v1

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Seq: CP050974.1 Streptomyces sp. RLB1-33 chromosome, complete genome (12127650 bp)
Overview 1 RT 1: 76701-81745 bp 2 RT 2: 166516-171809 bp 3 RT 3: 1125084-1132004 bp 4 RT 4: 1147588-1153168 bp 5 RT 5: 4672696-4681553 bp 6 RT 6: 9567335-9573705 bp 7 RT 7: 9663324-9668813 bp 8 RT 8: 11238646-11243177 bp 9 RT 9: 11575180-11579511 bp 10 RT 10: 11623680-11629160 bp 11 RT 11: 11866020-11878037 bp Neighborhood of RT #1 [76701, 81750] DDE_5 DDE_3 RVT-GII DUF4096 COG3293 VOC_like Neighborhood of RT #2 [166516, 171829] RimI RVT-GII GIIM HEAT_2 HEAT_2 Neighborhood of RT #3 [1125084, 1132090] Glyoxalase_6 STKc_PknB_like RVT_N RVT-GII GIIM HNH InsQ DUF4232 Neighborhood of RT #4 [1147588, 1153182] threonine_DH_like bac_FRK RVT-GII GIIM InsQ Y1_Tnp Neighborhood of RT #5 [4672696, 4681579] HTH_31 DUF397 RVT-GII SUKH_5 F5_F8_type_C F5_F8_type_C LacZ F5_F8_type_C F5_F8_type_C LacZ Ig_GlcNase Neighborhood of RT #6 [9567335, 9573797] KU_like CYTH-like_CthTTM-like RVT-GII GIIM ACAD ACAD Neighborhood of RT #7 [9663324, 9668813] COG2452 InsQ RVT_N RVT-GII RVT-GII GIIM HNH Neighborhood of RT #8 [11238646, 11243365] TetR_N TetR_C_33 mycothiol_MshB RVT-GII MRJP SnoaL_2 Neighborhood of RT #9 [11575180, 11579954] HTH_ARSR PhnA RVT-GII GIIM HTH_6 DDE_3 SMI1 Neighborhood of RT #10 [11623680, 11629246] DUF664 RVT-GII GIIM DEDD_Tnp_IS110 Transposase_20 DUF4096 DDE_Tnp_1 DDE_Tnp_1 Neighborhood of RT #11 [11866020, 11878054] Penicillinase_R RVT-GII GIIM InsQ RVT-GII InsE RVT-GII GIIM SIRT4 CBS_pair_BON_assoc BON Feature: gene Location: 76701-77860 bp Feature: domain Description: DDE_5 Location: 76761-77025 bp Feature: domain Description: DDE_5 Location: 76761 -77025 bp Feature: gene Location: 77844-78464 bp Ori: QIY76594.1 Feature: domain Description: DDE_3 Location: 77916-78354 bp Feature: domain Description: DDE_3 Location: 7791 6-78354 bp Feature: gene Location: 78475-79650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78640-79435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78640-79435 bp Feature: gene Location: 80284-80979 bp Feature: domain Description: DUF4096 Location: 80317-80467 bp Feature: domain Description: DUF4096 Location: 8031 7-80467 bp Feature: domain Description: COG3293 Location: 80755-80980 bp Feature: domain Description: COG3293 Location: 80755-80980 bp Feature: gene Location: 81310-81750 bp Ori: QIY68009.1 Feature: domain Description: VOC_like Location: 81319-81745 bp Feature: domain Description: VOC_like Location: 81 31 9-81 745 bp Feature: gene Location: 166516-166929 bp Feature: gene Location: 167105-167638 bp Ori: QIY68078.1 Feature: domain Description: RimI Location: 167204-167606 bp Feature: domain Description: RimI Location: 1 67204-1 67606 bp Feature: gene Location: 167978-169243 bp Ori: QIY68079.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168194-168854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 681 94-1 68854 bp Feature: domain Description: GIIM Note: maturase Location: 168932-169157 bp Feature: domain Description: GIIM Note: maturase Location: 1 68932-1 691 57 bp Feature: gene Location: 170117-170812 bp Feature: gene Location: 171032-171829 bp Ori: QIY68081.1 Feature: domain Description: HEAT_2 Location: 171326-171509 bp Feature: domain Description: HEAT_2 Location: 1 71 326-1 71 509 bp Feature: domain Description: HEAT_2 Location: 171557-171809 bp Feature: domain Description: HEAT_2 Location: 1 71 557-1 71 809 bp Feature: gene Location: 1125084-1125458 bp Ori: QIY76686.1 Feature: domain Description: Glyoxalase_6 Location: 1125108-1125450 bp Feature: domain Description: Glyoxalase_6 Location: 1 1 251 08-1 1 25450 bp Feature: gene Location: 1126536-1127672 bp Feature: domain Description: STKc_PknB_like Location: 1126587-1127319 bp Feature: domain Description: STKc_PknB_like Location: 1 1 26587-1 1 2731 9 bp Feature: gene Location: 1128126-1129910 bp Ori: QIY76687.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1128189-1128435 bp Feature: domain Description: RVT_N Location: 1 1 281 89-1 1 28435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1128486-1129140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 28486-1 1 291 40 bp Feature: domain Description: GIIM Note: maturase Location: 1129200-1129428 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 29200-1 1 29428 bp Feature: domain Description: HNH Note: nucleases Location: 1129755-1129854 bp Feature: domain Description: HNH Note: nucleases Location: 1 1 29755-1 1 29854 bp Feature: gene Location: 1130508-1131335 bp Ori: QIY68698.1 Gene: tnpB Feature: domain Description: InsQ Location: 1130514-1131267 bp Feature: domain Description: InsQ Location: 1 1 3051 4-1 1 31 267 bp Feature: gene Location: 1131623-1132090 bp Ori: QIY68699.1 Feature: domain Description: DUF4232 Location: 1131668-1132004 bp Feature: domain Description: DUF4232 Location: 1 1 31 668-1 1 32004 bp Feature: gene Location: 1147588-1148577 bp Ori: QIY68710.1 Feature: domain Description: threonine_DH_like Location: 1147594-1148569 bp Feature: domain Description: threonine_DH_like Location: 1 1 47594-1 1 48569 bp Feature: gene Location: 1148574-1149545 bp Ori: QIY68711.1 Feature: domain Description: bac_FRK Location: 1148598-1149510 bp Feature: domain Description: bac_FRK Location: 1 1 48598-1 1 4951 0 bp Feature: gene Location: 1149623-1150945 bp Ori: QIY76689.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1149881-1150496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 49881 -1 1 50496 bp Feature: domain Description: GIIM Note: maturase Location: 1150550-1150781 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 50550-1 1 50781 bp Feature: gene Location: 1151504-1152703 bp Ori: QIY68712.1 Feature: domain Description: InsQ Location: 1151507-1152683 bp Feature: domain Description: InsQ Location: 1 1 51 507-1 1 52683 bp Feature: gene Location: 1152754-1153182 bp Ori: QIY68713.1 Gene: tnpA Feature: domain Description: Y1_Tnp Location: 1152811-1153168 bp Feature: domain Description: Y1 _Tnp Location: 1 1 5281 1 -1 1 531 68 bp Feature: gene Location: 4672696-4673544 bp Ori: QIY71300.1 Feature: domain Description: HTH_31 Location: 4672729-4672909 bp Feature: domain Description: HTH_31 Location: 4672729-4672909 bp Feature: gene Location: 4673547-4673756 bp Ori: QIY76975.1 Feature: domain Description: DUF397 Location: 4673580-4673736 bp Feature: domain Description: DUF397 Location: 4673580-4673736 bp Feature: gene Location: 4674133-4675291 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4674250-4674553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4674250-4674553 bp Feature: gene Location: 4676295-4676891 bp Ori: QIY76976.1 Feature: domain Description: SUKH_5 Location: 4676310-4676475 bp Feature: domain Description: SUKH_5 Location: 467631 0-4676475 bp Feature: gene Location: 4677473-4681579 bp Ori: QIY71301.1 Feature: domain Description: F5_F8_type_C Location: 4677671-4677848 bp Feature: domain Description: F5_F8_type_C Location: 4677671 -4677848 bp Feature: domain Description: F5_F8_type_C Location: 4677920-4678085 bp Feature: domain Description: F5_F8_type_C Location: 4677920-4678085 bp Feature: domain Description: LacZ Location: 4678313-4679195 bp Feature: domain Description: LacZ Location: 467831 3-46791 95 bp Feature: domain Description: F5_F8_type_C Location: 4679396-4679759 bp Feature: domain Description: F5_F8_type_C Location: 4679396-4679759 bp Feature: domain Description: F5_F8_type_C Location: 4679819-4680056 bp Feature: domain Description: F5_F8_type_C Location: 467981 9-4680056 bp Feature: domain Description: LacZ Location: 4680068-4680407 bp Feature: domain Description: LacZ Location: 4680068-4680407 bp Feature: domain Description: Ig_GlcNase Location: 4681229-4681553 bp Feature: domain Description: Ig_GlcNase Location: 4681 229-4681 553 bp Feature: gene Location: 9567335-9568077 bp Feature: domain Description: KU_like Location: 9567344-9567590 bp Feature: domain Description: KU_like Location: 9567344-9567590 bp Feature: gene Location: 9568106-9568375 bp Feature: domain Description: CYTH-like_CthTTM-like Location: 9568124-9568307 bp Feature: domain Description: CYTH-like_CthTTM-like Location: 95681 24-9568307 bp Feature: gene Location: 9569149-9570405 bp Ori: QIY74831.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9569365-9570025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9569365-9570025 bp Feature: domain Description: GIIM Note: maturase Location: 9570103-9570322 bp Feature: domain Description: GIIM Note: maturase Location: 95701 03-9570322 bp Feature: gene Location: 9570648-9571843 bp Feature: gene Location: 9572766-9573797 bp Ori: QIY74832.1 Feature: domain Description: ACAD Location: 9572874-9573069 bp Feature: domain Description: ACAD Location: 9572874-9573069 bp Feature: domain Description: ACAD Location: 9573258-9573705 bp Feature: domain Description: ACAD Location: 9573258-9573705 bp Feature: gene Location: 9663324-9663908 bp Ori: QIY74898.1 Feature: domain Description: COG2452 Location: 9663330-9663879 bp Feature: domain Description: COG2452 Location: 9663330-9663879 bp Feature: gene Location: 9663905-9665161 bp Ori: QIY74899.1 Gene: tnpB Feature: domain Description: InsQ Location: 9664007-9665090 bp Feature: domain Description: InsQ Location: 9664007-9665090 bp Feature: gene Location: 9665750-9666379 bp Ori: QIY74900.1 Feature: domain Description: RVT_N Location: 9665822-9666068 bp Feature: domain Description: RVT_N Location: 9665822-9666068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9666119-9666269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96661 1 9-9666269 bp Feature: gene Location: 9666325-9667542 bp Ori: QIY77435.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9666328-9666772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9666328-9666772 bp Feature: domain Description: GIIM Note: maturase Location: 9666832-9667060 bp Feature: domain Description: GIIM Note: maturase Location: 9666832-9667060 bp Feature: domain Description: HNH Note: nucleases Location: 9667387-9667486 bp Feature: domain Description: HNH Note: nucleases Location: 9667387-9667486 bp Feature: gene Location: 9667995-9668183 bp Feature: gene Location: 9668310-9668813 bp Feature: gene Location: 11238646-11239395 bp Ori: QIY75989.1 Feature: domain Description: TetR_N Location: 11238808-11238937 bp Feature: domain Description: TetR_N Location: 1 1 238808-1 1 238937 bp Feature: domain Description: TetR_C_33 Location: 11239024-11239333 bp Feature: domain Description: TetR_C_33 Location: 1 1 239024-1 1 239333 bp Feature: gene Location: 11239601-11240434 bp Ori: QIY77595.1 Feature: domain Description: mycothiol_MshB Location: 11239631-11240429 bp Feature: domain Description: mycothiol_MshB Location: 1 1 239631 -1 1 240429 bp Feature: gene Location: 11240795-11241268 bp Ori: QIY75990.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11240849-11241203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 240849-1 1 241 203 bp Feature: gene Location: 11241397-11242554 bp Ori: QIY75991.1 Feature: domain Description: MRJP Location: 11241706-11242465 bp Feature: domain Description: MRJP Location: 1 1 241 706-1 1 242465 bp Feature: gene Location: 11242853-11243365 bp Ori: QIY75992.1 Feature: domain Description: SnoaL_2 Location: 11242889-11243177 bp Feature: domain Description: SnoaL_2 Location: 1 1 242889-1 1 2431 77 bp Feature: gene Location: 11575180-11575521 bp Ori: QIY76209.1 Feature: domain Description: HTH_ARSR Location: 11575222-11575441 bp Feature: domain Description: HTH_ARSR Location: 1 1 575222-1 1 575441 bp Feature: gene Location: 11575680-11576033 bp Ori: QIY77633.1 Feature: domain Description: PhnA Location: 11575689-11576028 bp Feature: domain Description: PhnA Location: 1 1 575689-1 1 576028 bp Feature: gene Location: 11577115-11578188 bp Ori: QIY77634.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11577163-11577802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 5771 63-1 1 577802 bp Feature: domain Description: GIIM Note: maturase Location: 11577883-11578105 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 577883-1 1 5781 05 bp Feature: gene Location: 11578288-11579118 bp Feature: domain Description: HTH_6 Location: 11578330-11578444 bp Feature: domain Description: HTH_6 Location: 1 1 578330-1 1 578444 bp Feature: domain Description: DDE_3 Location: 11578552-11578969 bp Feature: domain Description: DDE_3 Location: 1 1 578552-1 1 578969 bp Feature: gene Location: 11579292-11579954 bp Ori: QIY76210.1 Feature: domain Description: SMI1 Location: 11579322-11579511 bp Feature: domain Description: SMI1 Location: 1 1 579322-1 1 57951 1 bp Feature: gene Location: 11623680-11624231 bp Feature: gene Location: 11624460-11624915 bp Ori: QIY77642.1 Feature: domain Description: DUF664 Location: 11624466-11624901 bp Feature: domain Description: DUF664 Location: 1 1 624466-1 1 624901 bp Feature: gene Location: 11625653-11626909 bp Ori: QIY76238.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11625869-11626529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 625869-1 1 626529 bp Feature: domain Description: GIIM Note: maturase Location: 11626607-11626826 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 626607-1 1 626826 bp Feature: gene Location: 11627156-11628346 bp Ori: QIY76239.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 11627174-11627636 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 1 6271 74-1 1 627636 bp Feature: domain Description: Transposase_20 Location: 11627954-11628212 bp Feature: domain Description: Transposase_20 Location: 1 1 627954-1 1 62821 2 bp Feature: gene Location: 11628404-11629246 bp Ori: QIY77643.1 Feature: domain Description: DUF4096 Location: 11628428-11628659 bp Feature: domain Description: DUF4096 Location: 1 1 628428-1 1 628659 bp Feature: domain Description: DDE_Tnp_1 Location: 11628755-11628995 bp Feature: domain Description: DDE_Tnp_1 Location: 1 1 628755-1 1 628995 bp Feature: domain Description: DDE_Tnp_1 Location: 11629052-11629160 bp Feature: domain Description: DDE_Tnp_1 Location: 1 1 629052-1 1 6291 60 bp Feature: gene Location: 11866020-11866619 bp Feature: gene Location: 11866823-11867446 bp Ori: QIY76397.1 Feature: domain Description: Penicillinase_R Location: 11867243-11867417 bp Feature: domain Description: Penicillinase_R Location: 1 1 867243-1 1 86741 7 bp Feature: gene Location: 11868576-11870051 bp Ori: QIY76398.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11868918-11869614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 86891 8-1 1 86961 4 bp Feature: domain Description: GIIM Note: maturase Location: 11869689-11869908 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 869689-1 1 869908 bp Feature: gene Location: 11870234-11870689 bp Feature: gene Location: 11870763-11871329 bp Feature: gene Location: 11871474-11872688 bp Ori: QIY76401.1 Feature: domain Description: InsQ Location: 11871477-11872665 bp Feature: domain Description: InsQ Location: 1 1 871 477-1 1 872665 bp Feature: gene Location: 11873396-11873908 bp Ori: QIY77657.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11873504-11873906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 873504-1 1 873906 bp Feature: gene Location: 11873973-11875152 bp Feature: domain Description: InsE Location: 11873991-11874258 bp Feature: domain Description: InsE Location: 1 1 873991 -1 1 874258 bp Feature: gene Location: 11875202-11875861 bp Ori: QIY76402.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11875205-11875412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 875205-1 1 87541 2 bp Feature: domain Description: GIIM Note: maturase Location: 11875466-11875697 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 875466-1 1 875697 bp Feature: gene Location: 11876368-11877276 bp Ori: QIY76403.1 Feature: domain Description: SIRT4 Location: 11876464-11877211 bp Feature: domain Description: SIRT4 Location: 1 1 876464-1 1 87721 1 bp Feature: gene Location: 11877446-11878054 bp Feature: domain Description: CBS_pair_BON_assoc Location: 11877452-11877824 bp Feature: domain Description: CBS_pair_BON_assoc Location: 1 1 877452-1 1 877824 bp Feature: domain Description: BON Location: 11877839-11878037 bp Feature: domain Description: BON Location: 1 1 877839-1 1 878037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), DDE_3 (pfam13358), RVT-GII, DUF4096 (pfam13340), COG3293 (Transposase ), VOC_like (cd16355), RimI (COG0456), GIIM (pfam08388), HEAT_2 (pfam13646), Glyoxalase_6 (pfam18029)
STKc_PknB_like (cd14014), RVT_N (pfam13655), HNH (pfam01844), InsQ (COG0675), DUF4232 (pfam14016), threonine_DH_like (cd08234), bac_FRK (cd01167), Y1_Tnp (pfam01797), HTH_31 (pfam13560), DUF397 (pfam04149)
SUKH_5 (pfam14567), F5_F8_type_C (pfam00754), LacZ (COG3250), Ig_GlcNase (pfam18368), KU_like (cd00789), CYTH-like_CthTTM-like (cd07761), ACAD (cl09933), COG2452 (Predicted site-specific integrase-resolvase ), TetR_N (pfam00440), TetR_C_33
mycothiol_MshB (TIGR03445), MRJP (pfam03022), SnoaL_2 (pfam12680), HTH_ARSR (smart00418), PhnA (pfam03831), HTH_6 (pfam01418), SMI1 (COG4282), DUF664 (pfam04978), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371)
DDE_Tnp_1 (pfam01609), Penicillinase_R (pfam03965), InsE (COG2963), SIRT4 (cd01409), CBS_pair_BON_assoc (cd04586), BON (smart00749)