myRT

myRT report for GCA_012277295.1_ASM1227729v1

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Seq: CP051156.1 Wolbachia endosymbiont of Ctenocephalides felis wCfeT chromosome, complete genome (1495538 bp)
Overview 1 RT 1: 103037-106957 bp 2 RT 2: 110338-114633 bp 3 RT 3: 118014-123270 bp 4 RT 4: 909222-915781 bp 5 RT 5: 1109968-1114606 bp 6 RT 6: 1234707-1241503 bp 7 RT 7: 1393048-1399275 bp 8 RT 8: 1433589-1440390 bp Neighborhood of RT #1 [103037, 106957] DDE_Tnp_1 RVT-GII GIIM Neighborhood of RT #2 [110338, 114633] CESA_like_2 DDE_Tnp_1 RVT-GII GIIM Neighborhood of RT #3 [118014, 123270] CESA_like_2 DDE_Tnp_1 RVT-GII GIIM PTZ00127 Neighborhood of RT #4 [909222, 915870] PRK13354 PDDEXK_2 T_den_put_tspse RVT_N RVT-GII GIIM DUF2207 bZIP_ATF6 zf-IS66 DDE_Tnp_IS66 Neighborhood of RT #5 [1109968, 1114635] COQ7 RVT_N RVT-GII GIIM YceA COG3820 Neighborhood of RT #6 [1234707, 1241514] Lig HTH_37 RVT_N RVT-GII GIIM McrA bZIP_ATF6 zf-IS66 DDE_Tnp_IS66 Nth Neighborhood of RT #7 [1393048, 1399275] PRK07078 repA RVT-GII GIIM AAA_25 Neighborhood of RT #8 [1433589, 1440390] Lig HTH_37 RVT_N RVT-GII GIIM PDDEXK_2 Yae1_N Feature: gene Location: 103037-103456 bp Feature: gene Location: 103599-104729 bp Feature: domain Description: DDE_Tnp_1 Location: 104130-104673 bp Feature: domain Description: DDE_Tnp_1 Location: 1 041 30-1 04673 bp Feature: gene Location: 104955-106331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105159-105819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 051 59-1 0581 9 bp Feature: domain Description: GIIM Note: maturase Location: 105900-106119 bp Feature: domain Description: GIIM Note: maturase Location: 1 05900-1 061 1 9 bp Feature: gene Location: 106525-106707 bp Feature: gene Location: 106781-106957 bp Feature: gene Location: 110338-111255 bp Feature: domain Description: CESA_like_2 Location: 110341-110983 bp Feature: domain Description: CESA_like_2 Location: 1 1 0341 -1 1 0983 bp Feature: gene Location: 111275-112405 bp Feature: domain Description: DDE_Tnp_1 Location: 111806-112349 bp Feature: domain Description: DDE_Tnp_1 Location: 1 1 1 806-1 1 2349 bp Feature: gene Location: 112631-114007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112835-113495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 2835-1 1 3495 bp Feature: domain Description: GIIM Note: maturase Location: 113576-113795 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 3576-1 1 3795 bp Feature: gene Location: 114201-114383 bp Feature: gene Location: 114457-114633 bp Feature: gene Location: 118014-118931 bp Feature: domain Description: CESA_like_2 Location: 118017-118659 bp Feature: domain Description: CESA_like_2 Location: 1 1 801 7-1 1 8659 bp Feature: gene Location: 118951-120081 bp Feature: domain Description: DDE_Tnp_1 Location: 119482-120025 bp Feature: domain Description: DDE_Tnp_1 Location: 1 1 9482-1 20025 bp Feature: gene Location: 120307-121683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120511-121171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2051 1 -1 21 1 71 bp Feature: domain Description: GIIM Note: maturase Location: 121252-121471 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 252-1 21 471 bp Feature: gene Location: 121949-122959 bp Feature: domain Description: PTZ00127 Location: 121958-122948 bp Feature: domain Description: PTZ001 27 Location: 1 21 958-1 22948 bp Feature: gene Location: 123052-123270 bp Feature: gene Location: 909222-910481 bp Feature: domain Description: PRK13354 Location: 909240-910473 bp Feature: domain Description: PRK1 3354 Location: 909240-91 0473 bp Feature: gene Location: 910459-911409 bp Feature: domain Description: PDDEXK_2 Location: 910480-911152 bp Feature: domain Description: PDDEXK_2 Location: 91 0480-91 1 1 52 bp Feature: domain Description: T_den_put_tspse Location: 911233-911383 bp Feature: domain Description: T_den_put_tspse Location: 91 1 233-91 1 383 bp Feature: gene Location: 911393-913030 bp Feature: domain Description: RVT_N Location: 911444-911687 bp Feature: domain Description: RVT_N Location: 91 1 444-91 1 687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911732-912374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 1 732-91 2374 bp Feature: domain Description: GIIM Note: maturase Location: 912431-912662 bp Feature: domain Description: GIIM Note: maturase Location: 91 2431 -91 2662 bp Feature: gene Location: 913784-914296 bp Feature: domain Description: DUF2207 Location: 913907-914255 bp Feature: domain Description: DUF2207 Location: 91 3907-91 4255 bp Feature: gene Location: 914530-915870 bp Feature: domain Description: bZIP_ATF6 Location: 914545-914638 bp Feature: domain Description: bZIP_ATF6 Location: 91 4545-91 4638 bp Feature: domain Description: zf-IS66 Location: 914803-914932 bp Feature: domain Description: zf-IS66 Location: 91 4803-91 4932 bp Feature: domain Description: DDE_Tnp_IS66 Location: 914980-915781 bp Feature: domain Description: DDE_Tnp_IS66 Location: 91 4980-91 5781 bp Feature: gene Location: 1109968-1110204 bp Feature: gene Location: 1110296-1110814 bp Feature: domain Description: COQ7 Location: 1110326-1110806 bp Feature: domain Description: COQ7 Location: 1 1 1 0326-1 1 1 0806 bp Feature: gene Location: 1111462-1112943 bp Feature: domain Description: RVT_N Location: 1111513-1111756 bp Feature: domain Description: RVT_N Location: 1 1 1 1 51 3-1 1 1 1 756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1111801-1112443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 1 801 -1 1 1 2443 bp Feature: domain Description: GIIM Note: maturase Location: 1112500-1112731 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 2500-1 1 1 2731 bp Feature: gene Location: 1113146-1113961 bp Feature: domain Description: YceA Location: 1113155-1113950 bp Feature: domain Description: YceA Location: 1 1 1 31 55-1 1 1 3950 bp Feature: gene Location: 1114048-1114635 bp Feature: domain Description: COG3820 Location: 1114108-1114606 bp Feature: domain Description: COG3820 Location: 1 1 1 41 08-1 1 1 4606 bp Feature: gene Location: 1234707-1236659 bp Feature: domain Description: Lig Location: 1234719-1236648 bp Feature: domain Description: Lig Location: 1 23471 9-1 236648 bp Feature: gene Location: 1236689-1236982 bp Feature: domain Description: HTH_37 Location: 1236767-1236971 bp Feature: domain Description: HTH_37 Location: 1 236767-1 236971 bp Feature: gene Location: 1236990-1238777 bp Feature: domain Description: RVT_N Location: 1237041-1237287 bp Feature: domain Description: RVT_N Location: 1 237041 -1 237287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1237329-1238031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 237329-1 238031 bp Feature: domain Description: GIIM Note: maturase Location: 1238100-1238334 bp Feature: domain Description: GIIM Note: maturase Location: 1 2381 00-1 238334 bp Feature: domain Description: McrA Location: 1238415-1238694 bp Feature: domain Description: McrA Location: 1 23841 5-1 238694 bp Feature: gene Location: 1239445-1240785 bp Feature: domain Description: bZIP_ATF6 Location: 1239460-1239553 bp Feature: domain Description: bZIP_ATF6 Location: 1 239460-1 239553 bp Feature: domain Description: zf-IS66 Location: 1239718-1239847 bp Feature: domain Description: zf-IS66 Location: 1 23971 8-1 239847 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1239895-1240696 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 239895-1 240696 bp Feature: gene Location: 1240876-1241514 bp Feature: domain Description: Nth Location: 1240882-1241503 bp Feature: domain Description: Nth Location: 1 240882-1 241 503 bp Feature: gene Location: 1393048-1393521 bp Feature: gene Location: 1393518-1395596 bp Feature: domain Description: PRK07078 Location: 1393581-1394388 bp Feature: domain Description: PRK07078 Location: 1 393581 -1 394388 bp Feature: domain Description: repA Location: 1394496-1395249 bp Feature: domain Description: repA Location: 1 394496-1 395249 bp Feature: gene Location: 1395642-1396973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1395846-1396506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 395846-1 396506 bp Feature: domain Description: GIIM Note: maturase Location: 1396587-1396806 bp Feature: domain Description: GIIM Note: maturase Location: 1 396587-1 396806 bp Feature: gene Location: 1397486-1398613 bp Feature: domain Description: AAA_25 Location: 1397855-1398386 bp Feature: domain Description: AAA_25 Location: 1 397855-1 398386 bp Feature: gene Location: 1398781-1399275 bp Feature: gene Location: 1433589-1435535 bp Feature: domain Description: Lig Location: 1433601-1435521 bp Feature: domain Description: Lig Location: 1 433601 -1 435521 bp Feature: gene Location: 1435688-1435978 bp Feature: domain Description: HTH_37 Location: 1435715-1435913 bp Feature: domain Description: HTH_37 Location: 1 43571 5-1 43591 3 bp Feature: gene Location: 1436914-1438551 bp Feature: domain Description: RVT_N Location: 1436965-1437208 bp Feature: domain Description: RVT_N Location: 1 436965-1 437208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1437253-1437895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 437253-1 437895 bp Feature: domain Description: GIIM Note: maturase Location: 1437952-1438183 bp Feature: domain Description: GIIM Note: maturase Location: 1 437952-1 4381 83 bp Feature: gene Location: 1438493-1439467 bp Feature: domain Description: PDDEXK_2 Location: 1438556-1439237 bp Feature: domain Description: PDDEXK_2 Location: 1 438556-1 439237 bp Feature: domain Description: Yae1_N Location: 1439261-1439354 bp Feature: domain Description: Yae1 _N Location: 1 439261 -1 439354 bp Feature: gene Location: 1439485-1440390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), CESA_like_2 (cd06427), PTZ00127 (cytochrome c oxidase assembly protein; Provisional), PRK13354 (tyrosyl-tRNA synthetase; Provisional), PDDEXK_2 (pfam12784), T_den_put_tspse (TIGR01784), RVT_N (pfam13655), DUF2207 (pfam09972)
bZIP_ATF6 (cd14700), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), COQ7 (pfam03232), YceA (COG1054), COG3820 (Uncharacterized protein, DUF1013 family ), Lig (COG0272), HTH_37 (pfam13744), McrA (COG4058), Nth (COG0177)
PRK07078 (hypothetical protein; Validated), repA, AAA_25 (pfam13481), Yae1_N (pfam09811)