myRT

myRT report for GCA_012295505.1_ASM1229550v1

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Seq: CP051162.1 Geobacillus subterraneus strain CPW16 chromosome, complete genome (3544605 bp)
Overview 1 RT 1: 331399-336687 bp 2 RT 2: 546186-548753 bp 3 RT 3: 576634-583338 bp 4 RT 4: 652842-660252 bp 5 RT 5: 1488569-1494837 bp 6 RT 6: 1505093-1510851 bp 7 RT 7: 1797277-1804565 bp 8 RT 8: 2149711-2155368 bp 9 RT 9: 3065715-3071155 bp 10 RT 10: 3147293-3151852 bp 11 RT 11: 3422411-3426921 bp 12 RT 12: 3459429-3465095 bp Neighborhood of RT #1 [331399, 336692] Response_reg DUF2529 RVT-GII GIIM pyrG PRK02363 Neighborhood of RT #2 [546186, 548779] RVT-GII GIIM CtsR McsA Neighborhood of RT #3 [576634, 583346] PRK00007 EF-Tu RVT-GII GIIM rpsJ rplC Neighborhood of RT #4 [652842, 660341] COG4584 PRK09183 RVT-GII GIIM MdoB 2a38 Neighborhood of RT #5 [1488569, 1494837] PRK08309 DAP2 RVT-GII GIIM 2A0302 Neighborhood of RT #6 [1505093, 1510904] DUF111 RVT-GII GIIM McsA ClpA YtkA YtkA Neighborhood of RT #7 [1797277, 1804567] PRK00549 recA RVT-GII recA RNase_Y Neighborhood of RT #8 [2149711, 2155391] Ga5DH-like_SDR_c RVT-GII GIIM BaeS MFS_FsR Neighborhood of RT #9 [3065715, 3071178] DUF3231 DUF3231 PRK00110 RVT-GII GIIM Spore_YhcN_YlaJ nadE Neighborhood of RT #10 [3147293, 3151866] PRK00865 MarR RVT-GII GIIM HTH_LUXR sdhB Neighborhood of RT #11 [3422411, 3426926] BioY RVT-GII GIIM PitA YkaA Neighborhood of RT #12 [3459429, 3465106] YecE RhtB RVT-GII GIIM sufB SUF_scaf_2 Feature: gene Location: 331399-331761 bp Ori: QIZ66117.1 Feature: domain Description: Response_reg Location: 331414-331744 bp Feature: domain Description: Response_reg Location: 331 41 4-331 744 bp Feature: gene Location: 331885-332406 bp Ori: QIZ66118.1 Feature: domain Description: DUF2529 Location: 331888-332392 bp Feature: domain Description: DUF2529 Location: 331 888-332392 bp Feature: gene Location: 332521-333780 bp Ori: QIZ66119.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332719-333337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33271 9-333337 bp Feature: domain Description: GIIM Note: maturase Location: 333385-333598 bp Feature: domain Description: GIIM Note: maturase Location: 333385-333598 bp Feature: gene Location: 334374-335969 bp Ori: QIZ66120.1 Feature: domain Description: pyrG Location: 334377-335964 bp Feature: domain Description: pyrG Location: 334377-335964 bp Feature: gene Location: 336135-336692 bp Ori: QIZ68939.1 Feature: domain Description: PRK02363 Location: 336174-336687 bp Feature: domain Description: PRK02363 Location: 3361 74-336687 bp Feature: gene Location: 546186-547445 bp Ori: QIZ66296.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 546384-547002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 546384-547002 bp Feature: domain Description: GIIM Note: maturase Location: 547050-547263 bp Feature: domain Description: GIIM Note: maturase Location: 547050-547263 bp Feature: gene Location: 547755-548216 bp Ori: QIZ66297.1 Gene: ctsR Feature: domain Description: CtsR Location: 547764-548214 bp Feature: domain Description: CtsR Location: 547764-54821 4 bp Feature: gene Location: 548231-548779 bp Ori: QIZ66298.1 Feature: domain Description: McsA Location: 548237-548753 bp Feature: domain Description: McsA Location: 548237-548753 bp Feature: gene Location: 576634-578712 bp Ori: QIZ66323.1 Gene: fusA Feature: domain Description: PRK00007 Location: 576637-578704 bp Feature: domain Description: PRK00007 Location: 576637-578704 bp Feature: gene Location: 578835-580022 bp Ori: QIZ66324.1 Gene: tuf Feature: domain Description: EF-Tu Location: 578838-580020 bp Feature: domain Description: EF-Tu Location: 578838-580020 bp Feature: gene Location: 580620-581879 bp Ori: QIZ66325.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 580818-581436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58081 8-581 436 bp Feature: domain Description: GIIM Note: maturase Location: 581484-581697 bp Feature: domain Description: GIIM Note: maturase Location: 581 484-581 697 bp Feature: gene Location: 582377-582685 bp Ori: QIZ66326.1 Gene: rpsJ Feature: domain Description: rpsJ Location: 582380-582683 bp Feature: domain Description: rpsJ Location: 582380-582683 bp Feature: gene Location: 582711-583346 bp Ori: QIZ66327.1 Gene: rplC Feature: domain Description: rplC Location: 582714-583338 bp Feature: domain Description: rplC Location: 58271 4-583338 bp Feature: gene Location: 652842-654347 bp Ori: QIZ66400.1 Feature: domain Description: COG4584 Location: 652857-653709 bp Feature: domain Description: COG4584 Location: 652857-653709 bp Feature: gene Location: 654344-655096 bp Ori: QIZ66401.1 Feature: domain Description: PRK09183 Location: 654362-655055 bp Feature: domain Description: PRK091 83 Location: 654362-655055 bp Feature: gene Location: 655293-656552 bp Ori: QIZ66402.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 655491-656109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 655491 -6561 09 bp Feature: domain Description: GIIM Note: maturase Location: 656157-656370 bp Feature: domain Description: GIIM Note: maturase Location: 6561 57-656370 bp Feature: gene Location: 656604-658565 bp Ori: QIZ66403.1 Feature: domain Description: MdoB Location: 656661-658524 bp Feature: domain Description: MdoB Location: 656661 -658524 bp Feature: gene Location: 659004-660341 bp Ori: QIZ68952.1 Feature: domain Description: 2a38 Location: 659088-660252 bp Feature: domain Description: 2a38 Location: 659088-660252 bp Feature: gene Location: 1488569-1489120 bp Ori: QIZ67106.1 Feature: domain Description: PRK08309 Location: 1488572-1489094 bp Feature: domain Description: PRK08309 Location: 1 488572-1 489094 bp Feature: gene Location: 1489139-1491157 bp Ori: QIZ67107.1 Feature: domain Description: DAP2 Location: 1489172-1491146 bp Feature: domain Description: DAP2 Location: 1 4891 72-1 491 1 46 bp Feature: gene Location: 1491832-1493091 bp Ori: QIZ67108.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1492030-1492648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 492030-1 492648 bp Feature: domain Description: GIIM Note: maturase Location: 1492696-1492909 bp Feature: domain Description: GIIM Note: maturase Location: 1 492696-1 492909 bp Feature: gene Location: 1493165-1494589 bp Ori: QIZ67109.1 Feature: domain Description: 2A0302 Location: 1493177-1494563 bp Feature: domain Description: 2A0302 Location: 1 4931 77-1 494563 bp Feature: gene Location: 1494646-1494837 bp Feature: gene Location: 1505093-1505575 bp Ori: QIZ67120.1 Feature: domain Description: DUF111 Location: 1505120-1505531 bp Feature: domain Description: DUF1 1 1 Location: 1 5051 20-1 505531 bp Feature: gene Location: 1505586-1505837 bp Feature: gene Location: 1506404-1507663 bp Ori: QIZ67122.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1506602-1507220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 506602-1 507220 bp Feature: domain Description: GIIM Note: maturase Location: 1507268-1507481 bp Feature: domain Description: GIIM Note: maturase Location: 1 507268-1 507481 bp Feature: gene Location: 1507745-1509880 bp Ori: QIZ67123.1 Feature: domain Description: McsA Location: 1507748-1507880 bp Feature: domain Description: McsA Location: 1 507748-1 507880 bp Feature: domain Description: ClpA Location: 1507964-1509860 bp Feature: domain Description: ClpA Location: 1 507964-1 509860 bp Feature: gene Location: 1510161-1510904 bp Ori: QIZ67124.1 Feature: domain Description: YtkA Location: 1510257-1510494 bp Feature: domain Description: YtkA Location: 1 51 0257-1 51 0494 bp Feature: domain Description: YtkA Location: 1510617-1510851 bp Feature: domain Description: YtkA Location: 1 51 061 7-1 51 0851 bp Feature: gene Location: 1797277-1798521 bp Ori: QIZ67396.1 Feature: domain Description: PRK00549 Location: 1797283-1798510 bp Feature: domain Description: PRK00549 Location: 1 797283-1 79851 0 bp Feature: gene Location: 1798702-1798989 bp Feature: domain Description: recA Location: 1798708-1798990 bp Feature: domain Description: recA Location: 1 798708-1 798990 bp Feature: gene Location: 1799831-1801648 bp Ori: QIZ67397.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1800086-1800797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 800086-1 800797 bp Feature: gene Location: 1801692-1802534 bp Ori: QIZ69011.1 Gene: recA Feature: domain Description: recA Location: 1801782-1802481 bp Feature: domain Description: recA Location: 1 801 782-1 802481 bp Feature: gene Location: 1803011-1804567 bp Ori: QIZ67398.1 Gene: rny Feature: domain Description: RNase_Y Location: 1803029-1804565 bp Feature: domain Description: RNase_Y Location: 1 803029-1 804565 bp Feature: gene Location: 2149711-2150484 bp Ori: QIZ67687.1 Feature: domain Description: Ga5DH-like_SDR_c Location: 2149729-2150470 bp Feature: domain Description: Ga5DH-like_SDR_c Location: 21 49729-21 50470 bp Feature: gene Location: 2150676-2150882 bp Feature: gene Location: 2151493-2152752 bp Ori: QIZ67689.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2151691-2152309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 51 691 -21 52309 bp Feature: domain Description: GIIM Note: maturase Location: 2152357-2152570 bp Feature: domain Description: GIIM Note: maturase Location: 21 52357-21 52570 bp Feature: gene Location: 2152827-2154119 bp Ori: QIZ67690.1 Feature: domain Description: BaeS Location: 2153187-2154090 bp Feature: domain Description: BaeS Location: 21 531 87-21 54090 bp Feature: gene Location: 2154198-2155391 bp Ori: QIZ67691.1 Feature: domain Description: MFS_FsR Location: 2154264-2155368 bp Feature: domain Description: MFS_FsR Location: 21 54264-21 55368 bp Feature: gene Location: 3065715-3066725 bp Ori: QIZ68502.1 Feature: domain Description: DUF3231 Location: 3065733-3066195 bp Feature: domain Description: DUF3231 Location: 3065733-30661 95 bp Feature: domain Description: DUF3231 Location: 3066222-3066708 bp Feature: domain Description: DUF3231 Location: 3066222-3066708 bp Feature: gene Location: 3066824-3067567 bp Ori: QIZ68503.1 Feature: domain Description: PRK00110 Location: 3066827-3067547 bp Feature: domain Description: PRK001 1 0 Location: 3066827-3067547 bp Feature: gene Location: 3067734-3068993 bp Ori: QIZ68504.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3067932-3068550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3067932-3068550 bp Feature: domain Description: GIIM Note: maturase Location: 3068598-3068811 bp Feature: domain Description: GIIM Note: maturase Location: 3068598-306881 1 bp Feature: gene Location: 3069588-3070322 bp Ori: QIZ68505.1 Feature: domain Description: Spore_YhcN_YlaJ Location: 3069810-3070245 bp Feature: domain Description: Spore_YhcN_YlaJ Location: 306981 0-3070245 bp Feature: gene Location: 3070438-3071178 bp Ori: QIZ68506.1 Gene: nadE Feature: domain Description: nadE Location: 3070444-3071155 bp Feature: domain Description: nadE Location: 3070444-3071 1 55 bp Feature: gene Location: 3147293-3148087 bp Ori: QIZ68571.1 Gene: racE Feature: domain Description: PRK00865 Location: 3147302-3148052 bp Feature: domain Description: PRK00865 Location: 31 47302-31 48052 bp Feature: gene Location: 3148097-3148540 bp Ori: QIZ68572.1 Feature: domain Description: MarR Location: 3148163-3148523 bp Feature: domain Description: MarR Location: 31 481 63-31 48523 bp Feature: gene Location: 3148740-3149999 bp Ori: QIZ68573.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3148938-3149556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 48938-31 49556 bp Feature: domain Description: GIIM Note: maturase Location: 3149604-3149817 bp Feature: domain Description: GIIM Note: maturase Location: 31 49604-31 4981 7 bp Feature: gene Location: 3150639-3150863 bp Ori: QIZ68574.1 Feature: domain Description: HTH_LUXR Location: 3150669-3150831 bp Feature: domain Description: HTH_LUXR Location: 31 50669-31 50831 bp Feature: gene Location: 3151105-3151866 bp Ori: QIZ68575.1 Gene: sdhB Feature: domain Description: sdhB Location: 3151114-3151852 bp Feature: domain Description: sdhB Location: 31 51 1 1 4-31 51 852 bp Feature: gene Location: 3422411-3422569 bp Feature: gene Location: 3422754-3423362 bp Ori: QIZ68813.1 Feature: domain Description: BioY Location: 3422790-3423333 bp Feature: domain Description: BioY Location: 3422790-3423333 bp Feature: gene Location: 3423437-3424696 bp Ori: QIZ68814.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3423635-3424253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3423635-3424253 bp Feature: domain Description: GIIM Note: maturase Location: 3424301-3424514 bp Feature: domain Description: GIIM Note: maturase Location: 3424301 -342451 4 bp Feature: gene Location: 3425290-3426288 bp Ori: QIZ68815.1 Feature: domain Description: PitA Location: 3425308-3426283 bp Feature: domain Description: PitA Location: 3425308-3426283 bp Feature: gene Location: 3426306-3426926 bp Ori: QIZ68816.1 Feature: domain Description: YkaA Location: 3426312-3426921 bp Feature: domain Description: YkaA Location: 342631 2-3426921 bp Feature: gene Location: 3459429-3460277 bp Ori: QIZ69113.1 Feature: domain Description: YecE Location: 3459432-3460266 bp Feature: domain Description: YecE Location: 3459432-3460266 bp Feature: gene Location: 3460473-3461105 bp Ori: QIZ68847.1 Feature: domain Description: RhtB Location: 3460485-3461094 bp Feature: domain Description: RhtB Location: 3460485-3461 094 bp Feature: gene Location: 3461229-3462488 bp Ori: QIZ68848.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3461427-3462045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3461 427-3462045 bp Feature: domain Description: GIIM Note: maturase Location: 3462093-3462306 bp Feature: domain Description: GIIM Note: maturase Location: 3462093-3462306 bp Feature: gene Location: 3463253-3464650 bp Ori: QIZ68849.1 Gene: sufB Feature: domain Description: sufB Location: 3463283-3464621 bp Feature: domain Description: sufB Location: 3463283-3464621 bp Feature: gene Location: 3464672-3465106 bp Ori: QIZ68850.1 Feature: domain Description: SUF_scaf_2 Location: 3464693-3465095 bp Feature: domain Description: SUF_scaf_2 Location: 3464693-3465095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Response_reg (pfam00072), DUF2529 (pfam10740), RVT-GII, GIIM (pfam08388), pyrG (PRK05380), PRK02363 (DNA-directed RNA polymerase subunit delta; Reviewed), CtsR (pfam05848), McsA (COG3880), PRK00007 (elongation factor G; Reviewed), EF-Tu (TIGR00485)
rpsJ (PRK00596), rplC (PRK00001), COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), MdoB (COG1368), 2a38 (TIGR00933), PRK08309 (short chain dehydrogenase; Provisional), DAP2 (COG1506), 2A0302 (TIGR00905), DUF111 (pfam01969)
ClpA (TIGR02639), YtkA (pfam13115), PRK00549 (competence damage-inducible protein A; Provisional), recA (PRK09519), RNase_Y (TIGR03319), Ga5DH-like_SDR_c (cd05347), BaeS (COG0642), MFS_FsR (cd17478), DUF3231 (pfam11553), PRK00110 (YebC/PmpR family DNA-binding transcriptional regulator)
Spore_YhcN_YlaJ (pfam09580), nadE (TIGR00552), PRK00865 (glutamate racemase; Provisional), MarR (pfam01047), HTH_LUXR (smart00421), sdhB, BioY (pfam02632), PitA (COG0306), YkaA (COG1392), YecE (COG1801)
RhtB (COG1280), sufB (TIGR01980), SUF_scaf_2 (TIGR01994)