myRT

myRT report for GCA_012427845.1_ASM1242784v1

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Seq: CP038498.1 Pectobacterium punjabense strain SS95 chromosome, complete genome (4793778 bp)
Overview 1 RT 1: 674691-681866 bp 2 RT 2: 1772868-1778682 bp 3 RT 3: 3992617-3998441 bp 4 RT 4: 4100957-4107177 bp 5 RT 5: 4576039-4580896 bp Neighborhood of RT #1 [674691, 681874] groES groEL RVT_N RVT-GII GIIM HNHc ubiC ubiA Neighborhood of RT #2 [1772868, 1778682] RVT-UG16 PRK13889 Neighborhood of RT #3 [3992617, 3998441] AzlC AraC_binding HTH_ARAC RVT-GII PRK15048 Neighborhood of RT #4 [4100957, 4107230] M48C_loiP_like CsgD RVT-GII SpeA DUF2684 Neighborhood of RT #5 [4576039, 4580896] AlpA RVT-UG17 SLATT_5 Feature: gene Location: 674691-675011 bp Ori: QJA18988.1 Feature: domain Description: groES Location: 674721-675006 bp Feature: domain Description: groES Location: 674721 -675006 bp Feature: gene Location: 675057-676703 bp Ori: QJA18989.1 Gene: groL Feature: domain Description: groEL Location: 675063-676689 bp Feature: domain Description: groEL Location: 675063-676689 bp Feature: gene Location: 677811-679460 bp Ori: QJA18990.1 Gene: ltrA Feature: domain Description: RVT_N Location: 677862-678105 bp Feature: domain Description: RVT_N Location: 677862-6781 05 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 678150-678795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6781 50-678795 bp Feature: domain Description: GIIM Note: maturase Location: 678849-679080 bp Feature: domain Description: GIIM Note: maturase Location: 678849-679080 bp Feature: domain Description: HNHc Note: nucleases Location: 679290-679452 bp Feature: domain Description: HNHc Note: nucleases Location: 679290-679452 bp Feature: gene Location: 680465-680998 bp Ori: QJA18991.1 Gene: ubiC Feature: domain Description: ubiC Location: 680468-680969 bp Feature: domain Description: ubiC Location: 680468-680969 bp Feature: gene Location: 681011-681874 bp Ori: QJA18992.1 Feature: domain Description: ubiA Location: 681035-681866 bp Feature: domain Description: ubiA Location: 681 035-681 866 bp Feature: gene Location: 1772868-1773422 bp Feature: gene Location: 1773439-1774092 bp Feature: gene Location: 1774192-1775676 bp Ori: QJA19863.1 Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 1774555-1774963 bp Feature: RT Description: RVT-UG1 6 Note: UG1 6 RT Location: 1 774555-1 774963 bp Feature: gene Location: 1775859-1777253 bp Ori: QJA19864.1 Feature: domain Description: PRK13889 Location: 1775862-1776441 bp Feature: domain Description: PRK1 3889 Location: 1 775862-1 776441 bp Feature: gene Location: 1777930-1778682 bp Feature: gene Location: 3992617-3993351 bp Ori: QJA21712.1 Feature: domain Description: AzlC Location: 3992662-3993331 bp Feature: domain Description: AzlC Location: 3992662-3993331 bp Feature: gene Location: 3993535-3994371 bp Ori: QJA21713.1 Feature: domain Description: AraC_binding Location: 3993601-3993991 bp Feature: domain Description: AraC_binding Location: 3993601 -3993991 bp Feature: domain Description: HTH_ARAC Location: 3994114-3994354 bp Feature: domain Description: HTH_ARAC Location: 39941 1 4-3994354 bp Feature: gene Location: 3994587-3995511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3994914-3995094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 399491 4-3995094 bp Feature: gene Location: 3996031-3997650 bp Ori: QJA21714.1 Feature: domain Description: PRK15048 Location: 3996145-3997645 bp Feature: domain Description: PRK1 5048 Location: 39961 45-3997645 bp Feature: gene Location: 3998215-3998441 bp Feature: gene Location: 4100957-4101709 bp Ori: QJA21798.1 Feature: domain Description: M48C_loiP_like Location: 4101050-4101689 bp Feature: domain Description: M48C_loiP_like Location: 41 01 050-41 01 689 bp Feature: gene Location: 4102383-4102928 bp Ori: QJA22582.1 Feature: domain Description: CsgD Location: 4102653-4102839 bp Feature: domain Description: CsgD Location: 41 02653-41 02839 bp Feature: gene Location: 4103012-4103939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4103342-4103522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 03342-41 03522 bp Feature: gene Location: 4104444-4106423 bp Ori: QJA21799.1 Gene: speA Feature: domain Description: SpeA Location: 4104477-4106418 bp Feature: domain Description: SpeA Location: 41 04477-41 0641 8 bp Feature: gene Location: 4106964-4107230 bp Ori: QJA21800.1 Feature: domain Description: DUF2684 Location: 4107066-4107177 bp Feature: domain Description: DUF2684 Location: 41 07066-41 071 77 bp Feature: gene Location: 4576039-4576272 bp Ori: QJA22190.1 Feature: domain Description: AlpA Location: 4576051-4576243 bp Feature: domain Description: AlpA Location: 4576051 -4576243 bp Feature: gene Location: 4576464-4577555 bp Feature: gene Location: 4577792-4579162 bp Ori: QJA22192.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4578020-4578626 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 4578020-4578626 bp Feature: gene Location: 4579146-4579694 bp Ori: QJA22193.1 Feature: domain Description: SLATT_5 Location: 4579152-4579671 bp Feature: domain Description: SLATT_5 Location: 45791 52-4579671 bp Feature: gene Location: 4580111-4580896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), ubiC (PRK11655), ubiA (PRK13595), RVT-UG16, PRK13889 (conjugal transfer relaxase TraA; Provisional)
AzlC (pfam03591), AraC_binding (pfam02311), HTH_ARAC (smart00342), PRK15048 (methyl-accepting chemotaxis protein II; Provisional), M48C_loiP_like (cd07334), CsgD (COG2771), SpeA (COG1166), DUF2684, AlpA (COG3311), RVT-UG17
SLATT_5 (pfam18160)