myRT

myRT report for GCA_012516395.1_ASM1251639v1

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Seq: CP051206.1 Dolichospermum flos-aquae CCAP 1403/13F chromosome, complete genome (5151752 bp)
Overview 1 RT 1: 943497-950060 bp 2 RT 2: 1000279-1007302 bp 3 RT 3: 1913283-1919259 bp 4 RT 4: 2716103-2718516 bp Neighborhood of RT #1 [943497, 950060] Macro_Poa1p_like RVT_N RVT-GII GIIM McrA TrmJ Neighborhood of RT #2 [1000279, 1007460] POLBc_Pol_II_B PDDEXK_7 RVT-Retrons MoxR PRK07452 DUF820 Neighborhood of RT #3 [1913283, 1919366] Peptidase_M15 TIGR04376 RVT_N RVT-GII GIIM DUF4158 COG5421 Neighborhood of RT #4 [2716103, 2718581] PemK_toxin RVT-UG28b DUF4926 RelE Feature: gene Location: 943497-943748 bp Ori: QJB43656.1 Feature: domain Description: Macro_Poa1p_like Location: 943527-943659 bp Feature: domain Description: Macro_Poa1 p_like Location: 943527-943659 bp Feature: gene Location: 943941-944177 bp Feature: gene Location: 944728-946299 bp Ori: QJB43658.1 Feature: domain Description: RVT_N Location: 944764-945004 bp Feature: domain Description: RVT_N Location: 944764-945004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 945061-945715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 945061 -94571 5 bp Feature: domain Description: GIIM Note: maturase Location: 945772-945964 bp Feature: domain Description: GIIM Note: maturase Location: 945772-945964 bp Feature: domain Description: McrA Location: 946009-946270 bp Feature: domain Description: McrA Location: 946009-946270 bp Feature: gene Location: 946817-947587 bp Ori: QJB43659.1 Feature: domain Description: TrmJ Location: 946853-947564 bp Feature: domain Description: TrmJ Location: 946853-947564 bp Feature: gene Location: 947802-950060 bp Feature: gene Location: 1000279-1001010 bp Feature: domain Description: POLBc_Pol_II_B Location: 1000285-1000834 bp Feature: domain Description: POLBc_Pol_II_B Location: 1 000285-1 000834 bp Feature: gene Location: 1001042-1003123 bp Ori: QJB43706.1 Feature: domain Description: PDDEXK_7 Location: 1002197-1002524 bp Feature: domain Description: PDDEXK_7 Location: 1 0021 97-1 002524 bp Feature: gene Location: 1003135-1005408 bp Ori: QJB43707.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1003351-1003909 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 003351 -1 003909 bp Feature: domain Description: MoxR Location: 1004344-1004671 bp Feature: domain Description: MoxR Location: 1 004344-1 004671 bp Feature: gene Location: 1005829-1006533 bp Gene: holA Feature: domain Description: PRK07452 Location: 1005832-1006534 bp Feature: domain Description: PRK07452 Location: 1 005832-1 006534 bp Feature: gene Location: 1006885-1007460 bp Ori: QJB46943.1 Feature: domain Description: DUF820 Location: 1006906-1007302 bp Feature: domain Description: DUF820 Location: 1 006906-1 007302 bp Feature: gene Location: 1913283-1914119 bp Ori: QJB44349.1 Feature: domain Description: Peptidase_M15 Location: 1913724-1914003 bp Feature: domain Description: Peptidase_M1 5 Location: 1 91 3724-1 91 4003 bp Feature: gene Location: 1914299-1914880 bp Ori: QJB44350.1 Feature: domain Description: TIGR04376 Location: 1914305-1914851 bp Feature: domain Description: TIGR04376 Location: 1 91 4305-1 91 4851 bp Feature: gene Location: 1915403-1916896 bp Ori: QJB44351.1 Feature: domain Description: RVT_N Location: 1915439-1915685 bp Feature: domain Description: RVT_N Location: 1 91 5439-1 91 5685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1915736-1916393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 5736-1 91 6393 bp Feature: domain Description: GIIM Note: maturase Location: 1916450-1916648 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 6450-1 91 6648 bp Feature: gene Location: 1917334-1917555 bp Ori: QJB46996.1 Feature: domain Description: DUF4158 Location: 1917343-1917493 bp Feature: domain Description: DUF41 58 Location: 1 91 7343-1 91 7493 bp Feature: gene Location: 1917729-1919366 bp Ori: QJB46997.1 Feature: domain Description: COG5421 Location: 1917744-1919259 bp Feature: domain Description: COG5421 Location: 1 91 7744-1 91 9259 bp Feature: gene Location: 2716103-2716315 bp Feature: domain Description: PemK_toxin Location: 2716109-2716304 bp Feature: domain Description: PemK_toxin Location: 271 61 09-271 6304 bp Feature: gene Location: 2716308-2716538 bp Feature: gene Location: 2716735-2717769 bp Ori: QJB45008.1 Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 2716738-2717185 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 271 6738-271 71 85 bp Feature: gene Location: 2717963-2718211 bp Ori: QJB45009.1 Feature: domain Description: DUF4926 Location: 2717987-2718158 bp Feature: domain Description: DUF4926 Location: 271 7987-271 81 58 bp Feature: gene Location: 2718204-2718581 bp Ori: QJB45010.1 Feature: domain Description: RelE Location: 2718237-2718516 bp Feature: domain Description: RelE Location: 271 8237-271 851 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Macro_Poa1p_like, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), TrmJ (COG0565), POLBc_Pol_II_B (cd05538), PDDEXK_7 (pfam04411), RVT-Retrons, MoxR (COG0714)
PRK07452 (DNA polymerase III subunit delta; Validated), DUF820, Peptidase_M15 (pfam01427), TIGR04376 (TIGR04376 family protein), DUF4158 (pfam13700), COG5421 (Transposase ), PemK_toxin (pfam02452), RVT-UG28b, DUF4926 (pfam16277), RelE (pfam06296)