myRT

myRT report for GCA_012584495.1_ASM1258449v1

Download annotations/find similar RTs

Seq: CP051430.1 Escherichia sp. SCLE84 chromosome, complete genome (5024521 bp)
Overview 1 RT 1: 1192573-1197947 bp 2 RT 2: 1472998-1481082 bp Neighborhood of RT #1 [1192573, 1197958] COG3547 PHA02517 RVT-GII GIIM InsE IS285 Neighborhood of RT #2 [1472998, 1481192] P Q RVT-Retrons SIR2_2 YjgR YjgR Feature: gene Location: 1192573-1193649 bp Ori: QJC46230.1 Feature: domain Description: COG3547 Location: 1192612-1193533 bp Feature: domain Description: COG3547 Location: 1 1 9261 2-1 1 93533 bp Feature: gene Location: 1193931-1194110 bp Feature: domain Description: PHA02517 Location: 1193934-1194111 bp Feature: domain Description: PHA0251 7 Location: 1 1 93934-1 1 941 1 1 bp Feature: gene Location: 1194191-1195699 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1194449-1195181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 94449-1 1 951 81 bp Feature: domain Description: GIIM Note: maturase Location: 1195256-1195454 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 95256-1 1 95454 bp Feature: gene Location: 1196372-1197111 bp Feature: domain Description: InsE Location: 1196375-1196711 bp Feature: domain Description: InsE Location: 1 1 96375-1 1 9671 1 bp Feature: gene Location: 1197167-1197958 bp Feature: domain Description: IS285 Location: 1197170-1197947 bp Feature: domain Description: IS285 Location: 1 1 971 70-1 1 97947 bp Feature: gene Location: 1472998-1474764 bp Ori: QJC46470.1 Feature: domain Description: P Location: 1473025-1474759 bp Feature: domain Description: P Location: 1 473025-1 474759 bp Feature: gene Location: 1474764-1475795 bp Ori: QJC46471.1 Feature: domain Description: Q Location: 1474767-1475790 bp Feature: domain Description: Q Location: 1 474767-1 475790 bp Feature: gene Location: 1475845-1477602 bp Ori: QJC46472.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1475989-1476610 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 475989-1 47661 0 bp Feature: gene Location: 1478293-1479336 bp Ori: QJC46473.1 Feature: domain Description: SIR2_2 Location: 1478674-1479262 bp Feature: domain Description: SIR2_2 Location: 1 478674-1 479262 bp Feature: gene Location: 1479333-1481192 bp Ori: QJC46474.1 Feature: domain Description: YjgR Location: 1479777-1480014 bp Feature: domain Description: YjgR Location: 1 479777-1 48001 4 bp Feature: domain Description: YjgR Location: 1480698-1481082 bp Feature: domain Description: YjgR Location: 1 480698-1 481 082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), IS285 (COG3328), P (PHA02535), Q (PHA02536), RVT-Retrons, SIR2_2 (pfam13289)
YjgR (COG0433)

Seq: CP051433.1 Escherichia sp. SCLE84 plasmid pSCLE3, complete sequence (96595 bp)
Overview 1 RT 1: 16071-20862 bp Neighborhood of RT #1 [16071, 20876] Zn_Tnp_IS91 Y2_Tnp RVT-GII zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 AfaD-like Feature: gene Location: 16071-17270 bp Ori: QJC50049.1 Feature: domain Description: Zn_Tnp_IS91 Location: 16122-16389 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1612 2 -16389 bp Feature: domain Description: Y2_Tnp Location: 16503-17037 bp Feature: domain Description: Y2 _Tnp Location: 16503-17037 bp Feature: gene Location: 17280-17468 bp Feature: gene Location: 17670-19127 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18045-18735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18045-18735 bp Feature: gene Location: 19332-20309 bp Ori: QJC50040.1 Feature: domain Description: zf-ISL3 Location: 19464-19590 bp Feature: domain Description: zf-ISL3 Location: 19464-19590 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 19608-19755 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 19608-19755 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 19806-20280 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 19806-2 02 80 bp Feature: gene Location: 20427-20876 bp Ori: QJC50051.1 Feature: domain Description: AfaD-like Location: 20523-20862 bp Feature: domain Description: AfaD-like Location: 2 052 3-2 0862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), RVT-GII, zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), AfaD-like (cd18776)