myRT

myRT report for GCA_012689525.1_ASM1268952v1

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Seq: CP051514.1 Paraburkholderia aromaticivorans strain AR20-38 chromosome 1, complete sequence (2486079 bp)
Overview 1 RT 1: 435859-441396 bp 2 RT 2: 498667-507909 bp 3 RT 3: 774567-779231 bp 4 RT 4: 864629-868093 bp 5 RT 5: 1317710-1321556 bp 6 RT 6: 1597217-1599869 bp 7 RT 7: 2221652-2227746 bp 8 RT 8: 2374260-2377589 bp 9 RT 9: 2428256-2433204 bp 10 RT 10: 2467041-2472353 bp Neighborhood of RT #1 [435859, 441419] Phage_int_SAM_1 INT_RitA_C_like RVT-GII GIIM GalU Neighborhood of RT #2 [498667, 508097] InsE PHA02517 RVT-GII GIIM HTH_Tnp_1 HTH_Tnp_1 HTH_23 Tra5 RVT-GII HTH_Tnp_1 HTH_Tnp_1 HTH_23 Tra5 Neighborhood of RT #3 [774567, 779269] DUF4148 RVT-GII GIIM COG5659 COG5659 Neighborhood of RT #4 [864629, 868093] DDE_Tnp_ISL3 RVT-GII GIIM Resolvase Recombinase Zn_ribbon_recom Neighborhood of RT #5 [1317710, 1322155] Rve RVT-GII GIIM HNH Resolvase Recombinase Zn_ribbon_recom Neighborhood of RT #6 [1597217, 1599931] IS5 RVT-GII GIIM PIN_NgFitB-like PIN_NgFitB-like Neighborhood of RT #7 [2221652, 2227746] Phage_int_SAM_1 Phage_int_SAM_1 INT_RitA_C_like Phage_int_SAM_4 INT_IntI_C RVT-GII GIIM COG5659 Neighborhood of RT #8 [2374260, 2377589] InsQ RVT-GII GIIM OrfB_Zn_ribbon Neighborhood of RT #9 [2428256, 2433206] PBP2_Bug_TTT RVT-GII RVT-GII GIIM GntR gram_neg_porins Neighborhood of RT #10 [2467041, 2472409] Rve RVT-GII GIIM MmgE_PrpD Feature: gene Location: 435859-436095 bp Feature: gene Location: 436216-437604 bp Feature: domain Description: Phage_int_SAM_1 Location: 436582-436825 bp Feature: domain Description: Phage_int_SAM_1 Location: 436582-436825 bp Feature: domain Description: INT_RitA_C_like Location: 436909-437326 bp Feature: domain Description: INT_RitA_C_like Location: 436909-437326 bp Feature: gene Location: 438280-439605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438583-439219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438583-43921 9 bp Feature: domain Description: GIIM Note: maturase Location: 439297-439516 bp Feature: domain Description: GIIM Note: maturase Location: 439297-43951 6 bp Feature: gene Location: 439902-440276 bp Feature: gene Location: 440538-441419 bp Feature: domain Description: GalU Location: 440544-441396 bp Feature: domain Description: GalU Location: 440544-441 396 bp Feature: gene Location: 498667-498963 bp Feature: domain Description: InsE Location: 498670-498955 bp Feature: domain Description: InsE Location: 498670-498955 bp Feature: gene Location: 498960-499844 bp Feature: domain Description: PHA02517 Location: 499029-499803 bp Feature: domain Description: PHA0251 7 Location: 499029-499803 bp Feature: gene Location: 499884-500909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499893-500556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499893-500556 bp Feature: domain Description: GIIM Note: maturase Location: 500625-500841 bp Feature: domain Description: GIIM Note: maturase Location: 500625-500841 bp Feature: gene Location: 501290-502825 bp Feature: gene Location: 502841-503017 bp Feature: gene Location: 503820-504320 bp Feature: domain Description: HTH_Tnp_1 Location: 503823-503967 bp Feature: domain Description: HTH_Tnp_1 Location: 503823-503967 bp Feature: domain Description: HTH_Tnp_1 Location: 504003-504234 bp Feature: domain Description: HTH_Tnp_1 Location: 504003-504234 bp Feature: gene Location: 504317-505396 bp Feature: domain Description: HTH_23 Location: 504371-504440 bp Feature: domain Description: HTH_23 Location: 504371 -504440 bp Feature: domain Description: Tra5 Location: 504593-505208 bp Feature: domain Description: Tra5 Location: 504593-505208 bp Feature: gene Location: 505399-506292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 505750-506257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 505750-506257 bp Feature: gene Location: 506521-507021 bp Feature: domain Description: HTH_Tnp_1 Location: 506524-506668 bp Feature: domain Description: HTH_Tnp_1 Location: 506524-506668 bp Feature: domain Description: HTH_Tnp_1 Location: 506704-506935 bp Feature: domain Description: HTH_Tnp_1 Location: 506704-506935 bp Feature: gene Location: 507018-508097 bp Feature: domain Description: HTH_23 Location: 507072-507141 bp Feature: domain Description: HTH_23 Location: 507072-5071 41 bp Feature: domain Description: Tra5 Location: 507294-507909 bp Feature: domain Description: Tra5 Location: 507294-507909 bp Feature: gene Location: 774567-774782 bp Feature: gene Location: 775208-775528 bp Feature: domain Description: DUF4148 Location: 775211-775376 bp Feature: domain Description: DUF41 48 Location: 77521 1 -775376 bp Feature: gene Location: 776067-777389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 776370-777006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 776370-777006 bp Feature: domain Description: GIIM Note: maturase Location: 777084-777303 bp Feature: domain Description: GIIM Note: maturase Location: 777084-777303 bp Feature: gene Location: 777968-778318 bp Feature: domain Description: COG5659 Location: 777983-778316 bp Feature: domain Description: COG5659 Location: 777983-77831 6 bp Feature: gene Location: 778325-779269 bp Feature: domain Description: COG5659 Location: 778331-779231 bp Feature: domain Description: COG5659 Location: 778331 -779231 bp Feature: gene Location: 864629-864808 bp Feature: gene Location: 864827-865093 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 864833-865037 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 864833-865037 bp Feature: gene Location: 865177-865785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 865183-865402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8651 83-865402 bp Feature: domain Description: GIIM Note: maturase Location: 865483-865705 bp Feature: domain Description: GIIM Note: maturase Location: 865483-865705 bp Feature: gene Location: 866168-867946 bp Feature: domain Description: Resolvase Location: 866189-866627 bp Feature: domain Description: Resolvase Location: 8661 89-866627 bp Feature: domain Description: Recombinase Location: 866723-867086 bp Feature: domain Description: Recombinase Location: 866723-867086 bp Feature: domain Description: Zn_ribbon_recom Location: 867131-867335 bp Feature: domain Description: Zn_ribbon_recom Location: 8671 31 -867335 bp Feature: gene Location: 867965-868093 bp Feature: gene Location: 1317710-1317883 bp Feature: gene Location: 1318813-1319082 bp Feature: domain Description: Rve Location: 1318900-1319050 bp Feature: domain Description: Rve Location: 1 31 8900-1 31 9050 bp Feature: gene Location: 1319107-1320036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1319110-1319353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 91 1 0-1 31 9353 bp Feature: domain Description: GIIM Note: maturase Location: 1319404-1319638 bp Feature: domain Description: GIIM Note: maturase Location: 1 31 9404-1 31 9638 bp Feature: domain Description: HNH Note: nucleases Location: 1319890-1320007 bp Feature: domain Description: HNH Note: nucleases Location: 1 31 9890-1 320007 bp Feature: gene Location: 1320207-1320392 bp Feature: gene Location: 1320389-1322155 bp Feature: domain Description: Resolvase Location: 1320410-1320848 bp Feature: domain Description: Resolvase Location: 1 32041 0-1 320848 bp Feature: domain Description: Recombinase Location: 1320944-1321307 bp Feature: domain Description: Recombinase Location: 1 320944-1 321 307 bp Feature: domain Description: Zn_ribbon_recom Location: 1321352-1321556 bp Feature: domain Description: Zn_ribbon_recom Location: 1 321 352-1 321 556 bp Feature: gene Location: 1597217-1597570 bp Feature: domain Description: IS5 Location: 1597226-1597541 bp Feature: domain Description: IS5 Location: 1 597226-1 597541 bp Feature: gene Location: 1597563-1597850 bp Feature: gene Location: 1597871-1598821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1597931-1598438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 597931 -1 598438 bp Feature: domain Description: GIIM Note: maturase Location: 1598516-1598735 bp Feature: domain Description: GIIM Note: maturase Location: 1 59851 6-1 598735 bp Feature: gene Location: 1599517-1599645 bp Feature: domain Description: PIN_NgFitB-like Location: 1599526-1599640 bp Feature: domain Description: PIN_NgFitB-like Location: 1 599526-1 599640 bp Feature: gene Location: 1599662-1599931 bp Feature: domain Description: PIN_NgFitB-like Location: 1599668-1599869 bp Feature: domain Description: PIN_NgFitB-like Location: 1 599668-1 599869 bp Feature: gene Location: 2221652-2222911 bp Feature: domain Description: Phage_int_SAM_1 Location: 2221727-2221976 bp Feature: domain Description: Phage_int_SAM_1 Location: 2221 727-2221 976 bp Feature: domain Description: Phage_int_SAM_1 Location: 2222030-2222261 bp Feature: domain Description: Phage_int_SAM_1 Location: 2222030-2222261 bp Feature: domain Description: INT_RitA_C_like Location: 2222360-2222888 bp Feature: domain Description: INT_RitA_C_like Location: 2222360-2222888 bp Feature: gene Location: 2223349-2224365 bp Feature: domain Description: Phage_int_SAM_4 Location: 2223382-2223622 bp Feature: domain Description: Phage_int_SAM_4 Location: 2223382-2223622 bp Feature: domain Description: INT_IntI_C Location: 2223661-2224066 bp Feature: domain Description: INT_IntI_C Location: 2223661 -2224066 bp Feature: gene Location: 2224934-2226271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2225285-2225906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2225285-2225906 bp Feature: domain Description: GIIM Note: maturase Location: 2225957-2226170 bp Feature: domain Description: GIIM Note: maturase Location: 2225957-22261 70 bp Feature: gene Location: 2226423-2227556 bp Feature: domain Description: COG5659 Location: 2226447-2227551 bp Feature: domain Description: COG5659 Location: 2226447-2227551 bp Feature: gene Location: 2227564-2227746 bp Feature: gene Location: 2374260-2374598 bp Feature: gene Location: 2374664-2375473 bp Feature: domain Description: InsQ Location: 2374742-2375141 bp Feature: domain Description: InsQ Location: 2374742-23751 41 bp Feature: gene Location: 2375655-2376980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2375958-2376594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2375958-2376594 bp Feature: domain Description: GIIM Note: maturase Location: 2376672-2376891 bp Feature: domain Description: GIIM Note: maturase Location: 2376672-2376891 bp Feature: gene Location: 2376998-2377303 bp Feature: domain Description: OrfB_Zn_ribbon Location: 2377160-2377223 bp Feature: domain Description: OrfB_Zn_ribbon Location: 23771 60-2377223 bp Feature: gene Location: 2377359-2377589 bp Feature: gene Location: 2428256-2428429 bp Feature: gene Location: 2428788-2429441 bp Feature: domain Description: PBP2_Bug_TTT Location: 2429055-2429436 bp Feature: domain Description: PBP2_Bug_TTT Location: 2429055-2429436 bp Feature: gene Location: 2429908-2430666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2430235-2430628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2430235-2430628 bp Feature: gene Location: 2430644-2431396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2430647-2430857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2430647-2430857 bp Feature: domain Description: GIIM Note: maturase Location: 2430908-2431112 bp Feature: domain Description: GIIM Note: maturase Location: 2430908-2431 1 1 2 bp Feature: gene Location: 2431549-2432253 bp Feature: domain Description: GntR Location: 2431630-2432173 bp Feature: domain Description: GntR Location: 2431 630-24321 73 bp Feature: gene Location: 2432301-2433206 bp Feature: domain Description: gram_neg_porins Location: 2432310-2433204 bp Feature: domain Description: gram_neg_porins Location: 243231 0-2433204 bp Feature: gene Location: 2467041-2467343 bp Feature: domain Description: Rve Location: 2467083-2467308 bp Feature: domain Description: Rve Location: 2467083-2467308 bp Feature: gene Location: 2467676-2467804 bp Feature: gene Location: 2468619-2469944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2468922-2469558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2468922-2469558 bp Feature: domain Description: GIIM Note: maturase Location: 2469636-2469855 bp Feature: domain Description: GIIM Note: maturase Location: 2469636-2469855 bp Feature: gene Location: 2470037-2470474 bp Feature: gene Location: 2470886-2472409 bp Feature: domain Description: MmgE_PrpD Location: 2471039-2472353 bp Feature: domain Description: MmgE_PrpD Location: 2471 039-2472353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), RVT-GII, GIIM (pfam08388), GalU (COG1210), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_1 (pfam01527), HTH_23 (pfam13384), Tra5 (COG2801)
DUF4148 (pfam13663), COG5659 (SRSO17 transposase ), DDE_Tnp_ISL3 (pfam01610), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), Rve (COG3316), HNH (pfam01844), IS5 (COG3039), PIN_NgFitB-like (cd18731)
Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), InsQ (COG0675), OrfB_Zn_ribbon (pfam07282), PBP2_Bug_TTT (cd07012), GntR (pfam00392), gram_neg_porins (cd00342), MmgE_PrpD (pfam03972)

Seq: CP051516.1 Paraburkholderia aromaticivorans strain AR20-38 chromosome 3, complete sequence (4573438 bp)
Overview 1 RT 1: 9721-16489 bp 2 RT 2: 3933298-3935854 bp 3 RT 3: 3938796-3942211 bp Neighborhood of RT #1 [9721, 16503] DUF4194 DUF3375 RVT-Retrons GlxA GyrI-like 2A0305 Neighborhood of RT #2 [3933298, 3935854] RVT-GII GIIM RVT-GII DUF5372 Neighborhood of RT #3 [3938796, 3942213] Recombinase Zn_ribbon_recom RVT_N RVT-GII COG1981 Feature: gene Location: 9721-10368 bp Feature: domain Description: DUF4194 Location: 9784-10294 bp Feature: domain Description: DUF4194 Location: 9784-102 94 bp Feature: gene Location: 10371-11825 bp Feature: domain Description: DUF3375 Location: 10404-11817 bp Feature: domain Description: DUF3375 Location: 10404-11817 bp Feature: gene Location: 11933-13303 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12398-13037 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 398-13037 bp Feature: gene Location: 13962-14828 bp Feature: domain Description: GlxA Location: 13989-14307 bp Feature: domain Description: GlxA Location: 13989-14307 bp Feature: domain Description: GyrI-like Location: 14361-14823 bp Feature: domain Description: GyrI-like Location: 14361-1482 3 bp Feature: gene Location: 15046-16503 bp Feature: domain Description: 2A0305 Location: 15145-16489 bp Feature: domain Description: 2 A0305 Location: 15145-16489 bp Feature: gene Location: 3933298-3933747 bp Feature: gene Location: 3934032-3934208 bp Feature: gene Location: 3934257-3935027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3934422-3934746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393442 2 -3934746 bp Feature: domain Description: GIIM Note: maturase Location: 3934797-3935025 bp Feature: domain Description: GIIM Note: maturase Location: 3934797-393502 5 bp Feature: gene Location: 3934858-3935121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3934861-3935116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3934861-3935116 bp Feature: gene Location: 3935182-3935469 bp Feature: domain Description: DUF5372 Location: 3935200-3935431 bp Feature: domain Description: DUF5372 Location: 39352 00-3935431 bp Feature: gene Location: 3935579-3935854 bp Feature: gene Location: 3938796-3939428 bp Feature: domain Description: Recombinase Location: 3939042-3939402 bp Feature: domain Description: Recombinase Location: 3939042 -3939402 bp Feature: gene Location: 3939425-3940528 bp Feature: domain Description: Zn_ribbon_recom Location: 3939458-3939635 bp Feature: domain Description: Zn_ribbon_recom Location: 3939458-3939635 bp Feature: gene Location: 3940542-3940946 bp Feature: domain Description: RVT_N Location: 3940605-3940842 bp Feature: domain Description: RVT_N Location: 3940605-3940842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3940893-3940938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3940893-3940938 bp Feature: gene Location: 3941191-3941571 bp Feature: gene Location: 3941797-3942213 bp Feature: domain Description: COG1981 Location: 3941800-3942211 bp Feature: domain Description: COG1981 Location: 3941800-3942 2 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4194 (pfam13835), DUF3375 (pfam11855), RVT-Retrons, GlxA (COG4977), GyrI-like (pfam06445), 2A0305 (TIGR00908), RVT-GII, GIIM (pfam08388), DUF5372 (pfam17342), Recombinase (pfam07508)
Zn_ribbon_recom (pfam13408), RVT_N (pfam13655), COG1981 (Uncharacterized membrane protein )