myRT

myRT report for GCA_012851305.1_ASM1285130v1

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Seq: CP051672.1 Parabacteroides distasonis strain CBBP-1 chromosome, complete genome (5379509 bp)
Overview 1 RT 1: 1338589-1344987 bp 2 RT 2: 2333982-2342505 bp 3 RT 3: 2641667-2647981 bp 4 RT 4: 5075078-5082530 bp Neighborhood of RT #1 [1338589, 1345343] INT_RitA_C_like COG4646 RVT_N RVT-GII GIIM RutR Neighborhood of RT #2 [2333982, 2342549] PRK13351 Spc7 RVT_N RVT-GII GIIM COG4646 INT_RitA_C_like Neighborhood of RT #3 [2641667, 2648079] Penicillinase_R RVT_N RVT-GII GIIM COG4646 xerC Neighborhood of RT #4 [5075078, 5082530] RVT-DGRs Feature: gene Location: 1338589-1339800 bp Ori: QJE27886.1 Feature: domain Description: INT_RitA_C_like Location: 1339219-1339756 bp Feature: domain Description: INT_RitA_C_like Location: 1 33921 9-1 339756 bp Feature: gene Location: 1339946-1340962 bp Feature: domain Description: COG4646 Location: 1339952-1340579 bp Feature: domain Description: COG4646 Location: 1 339952-1 340579 bp Feature: gene Location: 1341621-1343306 bp Ori: QJE27887.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1341693-1341936 bp Feature: domain Description: RVT_N Location: 1 341 693-1 341 936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1341981-1342629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 341 981 -1 342629 bp Feature: domain Description: GIIM Note: maturase Location: 1342683-1342914 bp Feature: domain Description: GIIM Note: maturase Location: 1 342683-1 34291 4 bp Feature: gene Location: 1343308-1344588 bp Feature: gene Location: 1344732-1345343 bp Ori: QJE27888.1 Feature: domain Description: RutR Location: 1344744-1344987 bp Feature: domain Description: RutR Location: 1 344744-1 344987 bp Feature: gene Location: 2333982-2335907 bp Ori: QJE28673.1 Gene: tet(Q) Feature: domain Description: PRK13351 Location: 2333985-2335839 bp Feature: domain Description: PRK1 3351 Location: 2333985-2335839 bp Feature: gene Location: 2336565-2337830 bp Ori: QJE31061.1 Feature: domain Description: Spc7 Location: 2337441-2337708 bp Feature: domain Description: Spc7 Location: 2337441 -2337708 bp Feature: gene Location: 2337832-2339517 bp Ori: QJE28674.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2337904-2338147 bp Feature: domain Description: RVT_N Location: 2337904-23381 47 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2338192-2338840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23381 92-2338840 bp Feature: domain Description: GIIM Note: maturase Location: 2338894-2339125 bp Feature: domain Description: GIIM Note: maturase Location: 2338894-23391 25 bp Feature: gene Location: 2340176-2341192 bp Feature: domain Description: COG4646 Location: 2340182-2340809 bp Feature: domain Description: COG4646 Location: 23401 82-2340809 bp Feature: gene Location: 2341338-2342549 bp Ori: QJE28675.1 Feature: domain Description: INT_RitA_C_like Location: 2341968-2342505 bp Feature: domain Description: INT_RitA_C_like Location: 2341 968-2342505 bp Feature: gene Location: 2641667-2642035 bp Ori: QJE31078.1 Feature: domain Description: Penicillinase_R Location: 2641679-2642012 bp Feature: domain Description: Penicillinase_R Location: 2641 679-264201 2 bp Feature: gene Location: 2642221-2643501 bp Feature: gene Location: 2643503-2645188 bp Ori: QJE28950.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2643575-2643818 bp Feature: domain Description: RVT_N Location: 2643575-264381 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2643863-2644511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2643863-264451 1 bp Feature: domain Description: GIIM Note: maturase Location: 2644565-2644796 bp Feature: domain Description: GIIM Note: maturase Location: 2644565-2644796 bp Feature: gene Location: 2645847-2646851 bp Feature: domain Description: COG4646 Location: 2645850-2646468 bp Feature: domain Description: COG4646 Location: 2645850-2646468 bp Feature: gene Location: 2647030-2648079 bp Ori: QJE28951.1 Feature: domain Description: xerC Location: 2647057-2647981 bp Feature: domain Description: xerC Location: 2647057-2647981 bp Feature: gene Location: 5075078-5078740 bp Feature: gene Location: 5078926-5079342 bp Feature: gene Location: 5079323-5080348 bp Ori: QJE30697.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5079533-5080139 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5079533-50801 39 bp Feature: gene Location: 5080655-5081023 bp Feature: gene Location: 5081094-5082530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitA_C_like (cd01188), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RutR (TIGR03613), PRK13351 (elongation factor G-like protein), Spc7 (smart00787), Penicillinase_R (pfam03965), xerC (PRK01287)
RVT-DGRs