myRT

myRT report for GCA_012871055.1_ASM1287105v1

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Seq: AP013103.1 Bradyrhizobium elkanii USDA 61 DNA, complete genome (9548186 bp)
Overview 1 RT 1: 4130390-4137306 bp 2 RT 2: 8077105-8085581 bp 3 RT 3: 9423702-9427932 bp 4 RT 4: 9433675-9436735 bp 5 RT 5: 9534211-9541879 bp Neighborhood of RT #1 [4130390, 4137306] TnpB_IS66 COG3436 RVT-GII PHA00617 Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #2 [8077105, 8085581] Pyr_redox_2 RVT-Retrons Trypsin_2 HTH_ARSR COG3177 Neighborhood of RT #3 [9423702, 9427994] INT_RitC_C_like DDE_Tnp_IS66 RVT-GII GIIM LomR PHA02518 Neighborhood of RT #4 [9433675, 9436776] DDE_Tnp_1_4 RVT-GII RVT-GII RVT-GII MmsB Neighborhood of RT #5 [9534211, 9542562] HU_IHF DUF772 DDE_Tnp_1 DDE_Tnp_1 RVT-GII GIIM Resolvase Recombinase Zn_ribbon_recom PHA00617 RVT-GII rve Feature: gene Location: 4130390-4130737 bp Ori: BBB98569.1 Feature: domain Description: TnpB_IS66 Location: 4130417-4130708 bp Feature: domain Description: TnpB_IS66 Location: 41 3041 7-41 30708 bp Feature: gene Location: 4130808-4131620 bp Ori: BBB98570.1 Feature: domain Description: COG3436 Location: 4131111-4131576 bp Feature: domain Description: COG3436 Location: 41 31 1 1 1 -41 31 576 bp Feature: gene Location: 4132127-4132726 bp Ori: BBB98571.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4132334-4132724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 32334-41 32724 bp Feature: gene Location: 4132899-4133153 bp Ori: BBB98572.1 Feature: domain Description: PHA00617 Location: 4132950-4133136 bp Feature: domain Description: PHA0061 7 Location: 41 32950-41 331 36 bp Feature: gene Location: 4133294-4134994 bp Ori: BBB98573.1 Feature: domain Description: Resolvase Location: 4133306-4133747 bp Feature: domain Description: Resolvase Location: 41 33306-41 33747 bp Feature: domain Description: Recombinase Location: 4133834-4134194 bp Feature: domain Description: Recombinase Location: 41 33834-41 341 94 bp Feature: domain Description: Zn_ribbon_recom Location: 4134236-4134422 bp Feature: domain Description: Zn_ribbon_recom Location: 41 34236-41 34422 bp Feature: gene Location: 4134951-4135616 bp Ori: BBB98574.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4134954-4135224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 34954-41 35224 bp Feature: domain Description: GIIM Note: maturase Location: 4135311-4135521 bp Feature: domain Description: GIIM Note: maturase Location: 41 3531 1 -41 35521 bp Feature: gene Location: 4135609-4136697 bp Ori: BBB98575.1 Feature: domain Description: DDE_Tnp_IS66 Location: 4135702-4136338 bp Feature: domain Description: DDE_Tnp_IS66 Location: 41 35702-41 36338 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4136359-4136470 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 41 36359-41 36470 bp Feature: gene Location: 4136803-4137306 bp Feature: gene Location: 8077105-8078649 bp Ori: BBC02392.1 Feature: domain Description: Pyr_redox_2 Location: 8077279-8077687 bp Feature: domain Description: Pyr_redox_2 Location: 8077279-8077687 bp Feature: gene Location: 8079441-8079614 bp Feature: gene Location: 8079939-8081537 bp Ori: BBC02394.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8080098-8080698 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8080098-8080698 bp Feature: domain Description: Trypsin_2 Location: 8081055-8081457 bp Feature: domain Description: Trypsin_2 Location: 8081 055-8081 457 bp Feature: gene Location: 8081964-8083277 bp Ori: BBC02395.1 Feature: domain Description: HTH_ARSR Location: 8081976-8082171 bp Feature: domain Description: HTH_ARSR Location: 8081 976-80821 71 bp Feature: domain Description: COG3177 Location: 8082363-8083149 bp Feature: domain Description: COG31 77 Location: 8082363-80831 49 bp Feature: gene Location: 8083737-8085581 bp Feature: gene Location: 9423702-9424127 bp Ori: BBC03680.1 Feature: domain Description: INT_RitC_C_like Location: 9423705-9423831 bp Feature: domain Description: INT_RitC_C_like Location: 9423705-9423831 bp Feature: gene Location: 9423955-9424545 bp Ori: BBC03681.1 Feature: domain Description: DDE_Tnp_IS66 Location: 9423958-9424273 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9423958-9424273 bp Feature: gene Location: 9424782-9426110 bp Ori: BBC03682.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9425073-9425736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9425073-9425736 bp Feature: domain Description: GIIM Note: maturase Location: 9425802-9426024 bp Feature: domain Description: GIIM Note: maturase Location: 9425802-9426024 bp Feature: gene Location: 9426046-9426882 bp Ori: BBC03683.1 Feature: domain Description: LomR Location: 9426082-9426793 bp Feature: domain Description: LomR Location: 9426082-9426793 bp Feature: gene Location: 9427326-9427994 bp Ori: BBC03684.1 Feature: domain Description: PHA02518 Location: 9427335-9427932 bp Feature: domain Description: PHA0251 8 Location: 9427335-9427932 bp Feature: gene Location: 9433675-9434079 bp Feature: gene Location: 9434252-9434707 bp Ori: BBC03691.1 Feature: domain Description: DDE_Tnp_1_4 Location: 9434288-9434462 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 9434288-9434462 bp Feature: gene Location: 9434806-9435564 bp Ori: BBC03692.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9434824-9435187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9434824-94351 87 bp Feature: gene Location: 9435525-9435797 bp Ori: BBC03693.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9435528-9435786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9435528-9435786 bp Feature: gene Location: 9435724-9436284 bp Ori: BBC03694.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9436132-9436210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94361 32-943621 0 bp Feature: gene Location: 9436291-9436620 bp Feature: gene Location: 9436621-9436776 bp Ori: BBC03696.1 Feature: domain Description: MmsB Location: 9436624-9436735 bp Feature: domain Description: MmsB Location: 9436624-9436735 bp Feature: gene Location: 9534211-9534489 bp Ori: BBC03810.1 Feature: domain Description: HU_IHF Location: 9534226-9534475 bp Feature: domain Description: HU_IHF Location: 9534226-9534475 bp Feature: gene Location: 9534727-9536073 bp Ori: BBC03811.1 Feature: domain Description: DUF772 Location: 9534886-9535102 bp Feature: domain Description: DUF772 Location: 9534886-95351 02 bp Feature: domain Description: DDE_Tnp_1 Location: 9535555-9535774 bp Feature: domain Description: DDE_Tnp_1 Location: 9535555-9535774 bp Feature: domain Description: DDE_Tnp_1 Location: 9535846-9535963 bp Feature: domain Description: DDE_Tnp_1 Location: 9535846-9535963 bp Feature: gene Location: 9536242-9537069 bp Ori: BBC03812.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9536245-9536455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9536245-9536455 bp Feature: domain Description: GIIM Note: maturase Location: 9536506-9536704 bp Feature: domain Description: GIIM Note: maturase Location: 9536506-9536704 bp Feature: gene Location: 9536660-9538750 bp Ori: BBC03813.1 Feature: domain Description: Resolvase Location: 9536672-9537113 bp Feature: domain Description: Resolvase Location: 9536672-95371 1 3 bp Feature: domain Description: Recombinase Location: 9537200-9537560 bp Feature: domain Description: Recombinase Location: 9537200-9537560 bp Feature: domain Description: Zn_ribbon_recom Location: 9537602-9537788 bp Feature: domain Description: Zn_ribbon_recom Location: 9537602-9537788 bp Feature: gene Location: 9538891-9539145 bp Ori: BBC03814.1 Feature: domain Description: PHA00617 Location: 9538942-9539128 bp Feature: domain Description: PHA0061 7 Location: 9538942-95391 28 bp Feature: gene Location: 9539318-9540037 bp Ori: BBC03815.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9539645-9540035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9539645-9540035 bp Feature: gene Location: 9540251-9540493 bp Feature: gene Location: 9541330-9542562 bp Ori: BBC03817.1 Feature: domain Description: rve Location: 9541558-9541879 bp Feature: domain Description: rve Location: 9541 558-9541 879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), COG3436 (Transposase ), RVT-GII, PHA00617 (ribbon-helix-helix domain containing protein), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)
Pyr_redox_2 (pfam07992), RVT-Retrons, Trypsin_2 (pfam13365), HTH_ARSR (smart00418), COG3177 (Fic family protein ), INT_RitC_C_like (cd01182), LomR (COG3637), PHA02518 (ParA-like protein; Provisional), DDE_Tnp_1_4 (pfam13701), MmsB (COG2084)
HU_IHF (cl00257), DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), rve (pfam00665)