myRT

myRT report for GCA_012933055.2_ASM1293305v2

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Seq: CP059798.1 Enterococcus faecium strain BP3378 plasmid pBP3378_P5, complete sequence (17300 bp)
Overview 1 RT 1: 2-5825 bp Neighborhood of RT #1 [2, 5857] HsdM RVT-AbiP2 Tra8 Transposase_mut Feature: gene Location: 2-1447 bp Feature: domain Description: HsdM Location: 23-1448 bp Feature: domain Description: HsdM Location: 23-1 448 bp Feature: gene Location: 1785-3260 bp Ori: QMX56677.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2133-2598 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 21 33-2598 bp Feature: gene Location: 3238-4191 bp Ori: QMX56678.1 Feature: domain Description: Tra8 Location: 3241-4168 bp Feature: domain Description: Tra8 Location: 3241 -41 68 bp Feature: gene Location: 4685-5857 bp Ori: QMX56679.1 Feature: domain Description: Transposase_mut Location: 4688-5825 bp Feature: domain Description: Transposase_mut Location: 4688-5825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826), Transposase_mut (pfam00872)

Seq: CP059793.1 Enterococcus faecium strain BP3378 chromosome, complete genome (2792149 bp)
Overview 1 RT 1: 1159513-1164317 bp 2 RT 2: 1536889-1541892 bp Neighborhood of RT #1 [1159513, 1164331] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA Neighborhood of RT #2 [1536889, 1541906] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 1159513-1160697 bp Ori: QMX56006.1 Feature: domain Description: HTH_XRE Location: 1159543-1159687 bp Feature: domain Description: HTH_XRE Location: 1159543-1159687 bp Feature: domain Description: Rol_Rep_N Location: 1159720-1159984 bp Feature: domain Description: Rol_Rep_N Location: 115972 0-1159984 bp Feature: domain Description: Rep_trans Location: 1160008-1160620 bp Feature: domain Description: Rep_trans Location: 1160008-116062 0 bp Feature: gene Location: 1160694-1160831 bp Ori: QMX56007.1 Feature: domain Description: DUF3789 Location: 1160721-1160814 bp Feature: domain Description: DUF3789 Location: 116072 1-1160814 bp Feature: gene Location: 1161577-1163487 bp Ori: QMX56008.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1161910-1162648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1161910-1162 648 bp Feature: domain Description: HNHc Note: nucleases Location: 1163203-1163368 bp Feature: domain Description: HNHc Note: nucleases Location: 11632 03-1163368 bp Feature: gene Location: 1163591-1163815 bp Feature: gene Location: 1163828-1164331 bp Ori: QMX56009.1 Feature: domain Description: ArdA Location: 1163846-1164317 bp Feature: domain Description: ArdA Location: 1163846-1164317 bp Feature: gene Location: 1536889-1537042 bp Feature: gene Location: 1537065-1538270 bp Ori: QMX53898.1 Feature: domain Description: HTH_XRE Location: 1537110-1537254 bp Feature: domain Description: HTH_XRE Location: 1537110-15372 54 bp Feature: domain Description: Rol_Rep_N Location: 1537281-1537548 bp Feature: domain Description: Rol_Rep_N Location: 15372 81-1537548 bp Feature: domain Description: Rep_trans Location: 1537572-1538181 bp Feature: domain Description: Rep_trans Location: 1537572 -1538181 bp Feature: gene Location: 1539054-1540964 bp Ori: QMX53899.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1539387-1540125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1539387-154012 5 bp Feature: domain Description: HNHc Note: nucleases Location: 1540680-1540845 bp Feature: domain Description: HNHc Note: nucleases Location: 1540680-1540845 bp Feature: gene Location: 1541068-1541292 bp Feature: gene Location: 1541409-1541906 bp Ori: QMX53900.1 Feature: domain Description: ArdA Location: 1541427-1541892 bp Feature: domain Description: ArdA Location: 154142 7-1541892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), RVT-GII, HNHc (smart00507), ArdA (pfam07275)